RNA-Seq analysis to capture the transcriptome landscape of a single cell (Q33536986)

27 July 2017

RNA-Seq analysis to capture the transcriptome landscape of a single cell (English)

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27 July 2017

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Fuchou Tang

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Kaiqin Lao

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27 July 2017

Catalin Barbacioru

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27 July 2017

Ellen Nordman

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27 July 2017

Bin Li

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27 July 2017

Nanlan Xu

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27 July 2017

Vladimir I Bashkirov

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27 July 2017

25 February 2010

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516-535

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https://scigraph.springernature.com/pub.10.1038/nprot.2009.236

27 July 2017

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cites work

mRNA-Seq whole-transcriptome analysis of a single cell

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Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model

21 June 2018

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RNA-Seq: a revolutionary tool for transcriptomics

21 June 2018

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 June 2018

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Alternative isoform regulation in human tissue transcriptomes

21 June 2018

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Nature, nurture, or chance: stochastic gene expression and its consequences

21 June 2018

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Transcriptome content and dynamics at single-nucleotide resolution

21 June 2018

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The stochastic nature of biochemical networks

21 June 2018

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A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

21 June 2018

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

21 June 2018

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Stem cell transcriptome profiling via massive-scale mRNA sequencing

21 June 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 June 2018

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

The transcriptional landscape of the yeast genome defined by RNA sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Stochasticity and cell fate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Identification and characterization of subpopulations in undifferentiated ES cell culture

21 June 2018

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The impact of next-generation sequencing technology on genetics

21 June 2018

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Sequence census methods for functional genomics

21 June 2018

1 reference

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Next-generation sequencing transforms today's biology

21 June 2018

1 reference

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Nanog safeguards pluripotency and mediates germline development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Global single-cell cDNA amplification to provide a template for representative high-density oligonucleotide microarray analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Gene expression profiling of single cells on large-scale oligonucleotide arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Single-cell expression profiling of human epidermal stem and transit-amplifying cells: Lrig1 is a regulator of stem cell quiescence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Filtering transcriptional noise during development: concepts and mechanisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Noise in gene expression: origins, consequences, and control

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Strategies for microarray analysis of limiting amounts of RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Microarrays and the gene expression profile of a single cell

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Noise in eukaryotic gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Combined transcriptome and genome analysis of single micrometastatic cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Applying genomics technologies to neural development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

High density synthetic oligonucleotide arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Expression monitoring by hybridization to high-density oligonucleotide arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Use of a cDNA microarray to analyse gene expression patterns in human cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3847604

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping

21 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.236

RNA exosome depletion reveals transcription upstream of active human promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.236

The beginning of the end for microarrays?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.236

Dynamics of global gene expression changes during mouse preimplantation development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.236

Transcript profiling during preimplantation mouse development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.236

Integrating whole transcriptome assays on a lab-on-a-chip for single cell gene profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.236

Requirement for ERK MAP kinase in mouse preimplantation development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.236

220-plex microRNA expression profile of a single cell.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.236

Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.236

Expression profiling using cDNA microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.236

31 March 2020

Identifiers

DOI

10.1038/NPROT.2009.236

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Dimensions Publication ID

27 July 2017

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27 July 2017

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