MochiView: versatile software for genome browsing and DNA motif analysis (Q33561311)

28 July 2017

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title

MochiView: versatile software for genome browsing and DNA motif analysis (English)

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28 July 2017

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Oliver R Homann

1

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PubMed ID

20409324

28 July 2017

Alexander D Johnson

series ordinal

2

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28 July 2017

21 April 2010

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28 July 2017

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28 July 2017

8

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28 July 2017

49

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Creative Commons Attribution 2.0 Generic

28 July 2017

start time

21 April 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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April 2022 Public Data File from Crossref

uses

MochiView

1 reference

https://bmcbiol.biomedcentral.com/articles/10.1186/1741-7007-8-49

https://scigraph.springernature.com/pub.10.1186/1741-7007-8-49

14 September 2017

exact match

0 references

cites work

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Biofilm matrix regulation by Candida albicans Zap1.

21 June 2018

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Diversity and complexity in DNA recognition by transcription factors

21 June 2018

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High-resolution DNA-binding specificity analysis of yeast transcription factors

21 June 2018

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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

21 June 2018

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An integrated software system for analyzing ChIP-chip and ChIP-seq data

21 June 2018

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UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

21 June 2018

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BioJava: an open-source framework for bioinformatics

21 June 2018

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Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences

21 June 2018

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An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance

21 June 2018

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JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

21 June 2018

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Quantifying similarity between motifs

21 June 2018

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SwissRegulon: a database of genome-wide annotations of regulatory sites

21 June 2018

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Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

21 June 2018

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On counting position weight matrix matches in a sequence, with application to discriminative motif finding

21 June 2018

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Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

21 June 2018

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MEME: discovering and analyzing DNA and protein sequence motifs

21 June 2018

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What are DNA sequence motifs?

21 June 2018

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An improved map of conserved regulatory sites for Saccharomyces cerevisiae

21 June 2018

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Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

21 June 2018

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Conservation and evolution of cis-regulatory systems in ascomycete fungi

21 June 2018

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Transcriptional regulatory code of a eukaryotic genome

21 June 2018

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GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

21 June 2018

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JASPAR: an open-access database for eukaryotic transcription factor binding profiles

21 June 2018

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Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

21 June 2018

1 reference

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Sequencing and comparison of yeast species to identify genes and regulatory elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867778

The human genome browser at UCSC

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867778

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867778

Sequence logos: a new way to display consensus sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867778

MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867778

CIS: compound importance sampling method for protein-DNA binding site p-value estimation.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867778

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867778

Information for the Coordinates of Exons (ICE): a human splice sites database

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2867778

31 October 2018

Identifiers

DOI

10.1186/1741-7007-8-49

1 reference

PubMed ID

20409324

Dimensions Publication ID

28 July 2017

0 references

1 reference

28 July 2017

1 reference

PubMed ID

20409324