Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding (Q33602683)

28 July 2017

title

Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding (English)

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28 July 2017

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5

Barbara A Block

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28 July 2017

4

Lauren M Sassoubre

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28 July 2017

6

Alexandria B Boehm

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28 July 2017

author name string

Elizabeth A Andruszkiewicz

series ordinal

1

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28 July 2017

Hilary A Starks

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2

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28 July 2017

Francisco P Chavez

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3

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28 July 2017

language of work or name

English

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publication date

25 April 2017

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28 July 2017

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28 July 2017

volume

12

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28 July 2017

issue

4

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28 July 2017

page(s)

e0176343

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Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

25 April 2017

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

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Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

A framework for inferring biological communities from environmental DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Genetic signatures of ecological diversity along an urbanization gradient.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Indexed PCR Primers Induce Template-Specific Bias in Large-Scale DNA Sequencing Studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Statistical approaches to account for false-positive errors in environmental DNA samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Tag jumps illuminated--reducing sequence-to-sample misidentifications in metabarcoding studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Effects of ocean acidification on temperate coastal marine ecosystems and fisheries in the northeast Pacific

21 June 2018

1 reference

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Marine defaunation: animal loss in the global ocean

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Ancient and modern environmental DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Swarm: robust and fast clustering method for amplicon-based studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Environmental DNA for wildlife biology and biodiversity monitoring

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

taxize: taxonomic search and retrieval in R

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Using environmental DNA to census marine fishes in a large mesocosm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Environmental conditions influence eDNA persistence in aquatic systems.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Advances in genomics of bony fish

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

PEAR: a fast and accurate Illumina Paired-End reAd mergeR.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Detection of a diverse marine fish fauna using environmental DNA from seawater samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

DNA from soil mirrors plant taxonomic and growth form diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Monitoring endangered freshwater biodiversity using environmental DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

A holistic approach to marine eco-systems biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Ancient DNA from lake sediments: bridging the gap between paleoecology and genetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Search and clustering orders of magnitude faster than BLAST

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

BLAST+: architecture and applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Non-destructive sampling of ancient insect DNA

21 June 2018

1 reference

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Ecosystem overfishing in the ocean

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

Species detection using environmental DNA from water samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5404852

ARE INVASIVE SPECIES THE DRIVERS OR PASSENGERS OF CHANGE IN DEGRADED ECOSYSTEMS?

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0176343

Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0176343

Ocean plankton. Structure and function of the global ocean microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0176343

Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrog Lithobates catesbeianus

21 January 2018

1 reference

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Early detection of invasive species in marine ecosystems using high-throughput sequencing: technical challenges and possible solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0176343

Universal primer cocktails for fish DNA barcoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0176343

Monitoring the near-extinct European weather loach in Denmark based on environmental DNA from water samples

21 January 2018

1 reference

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Extinction risk in the sea.

21 January 2018

1 reference

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Impacts of trawling on the diversity, biomass and structure of meiofauna assemblages

30 October 2018

1 reference

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10.1371/JOURNAL.PONE.0176343

21 January 2018

Identifiers

DOI

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28 July 2017

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28 July 2017

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