Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication (Q33647648)

28 July 2017

title

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication (English)

1 reference

28 July 2017

1 reference

1 reference

1

1 reference

28 July 2017

13

1 reference

28 July 2017

30

1 reference

28 July 2017

32

1 reference

28 July 2017

39

Kerstin Lindblad-Toh

0 references

Jessica Alföldi

5

Jessica Alföldi

0 references

Eric Lander

37

Eric S Lander

1 reference

28 July 2017

10

Jason Turner-Maier

1 reference

28 July 2017

12

Sandra Afonso

1 reference

28 July 2017

Joel M Alves

14

0 references

Frank W Albert

Frank W Albert

4

0 references

Rita Campos

Rita Campos

19

0 references

Claire Rogel-Gaillard

Claire Rogel-Gaillard

29

0 references

Luca Fontanesi

Luca Fontanesi

22

0 references

Nuno Ferrand

38

Nuno Ferrand

1 reference

28 July 2017

40

Leif Andersson

1 reference

28 July 2017

18

Hernán A Burbano

1 reference

ORCID Public Data File 2021

28 July 2017

1 reference

Daniel Barrell

15

Daniel Barrell

1 reference

28 July 2017

31

Steve Searle

1 reference

28 July 2017

2

Carl-Johan Rubin

1 reference

28 July 2017

23

Hervé Garreau

1 reference

28 July 2017

28

Guillaume Queney

1 reference

28 July 2017

36

Jeffrey M Good

1 reference

28 July 2017

9

Shumaila Sayyab

1 reference

28 July 2017

11

Shady Younis

1 reference

28 July 2017

Alvaro Martinez Barrio

6

Alvaro Martinez Barrio

1 reference

28 July 2017

8

Nima Rafati

1 reference

28 July 2017

Karin Forsberg-Nilsson

35

Karin Forsberg-Nilsson

1 reference

28 July 2017

Federica Di Palma

3

1 reference

28 July 2017

Gerli Pielberg

7

1 reference

28 July 2017

Gerard Bolet

16

1 reference

28 July 2017

Samuel Boucher

17

1 reference

28 July 2017

Jean L Chang

20

1 reference

28 July 2017

Veronique Duranthon

21

1 reference

28 July 2017

David Heiman

24

1 reference

28 July 2017

Jeremy Johnson

25

1 reference

28 July 2017

Rose G Mage

26

1 reference

28 July 2017

Ze Peng

27

1 reference

28 July 2017

Anqi Xiong

33

1 reference

28 July 2017

Sarah Young

34

1 reference

28 July 2017

language of work or name

English

0 references

publication date

1 August 2014

1 reference

28 July 2017

1 reference

28 July 2017

volume

345

1 reference

28 July 2017

issue

6200

1 reference

28 July 2017

page(s)

1074-1079

1 reference

Molecular consequences of animal breeding

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

Strong signatures of selection in the domestic pig genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

A high-resolution map of human evolutionary constraint using 29 mammals

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

The genetic structure of domestic rabbits

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

GREAT improves functional interpretation of cis-regulatory regions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

Whole-genome resequencing reveals loci under selection during chicken domestication

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

THM1 negatively modulates mouse sonic hedgehog signal transduction and affects retrograde intraflagellar transport in cilia

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

A defect in the ionotropic glutamate receptor 6 gene (GRIK2) is associated with autosomal recessive mental retardation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

Genomic scans for selective sweeps using SNP data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

When less is more: gene loss as an engine of evolutionary change

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

The hitch-hiking effect of a favourable gene

14 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5421586

14 July 2018

https://pubmed.ncbi.nlm.nih.gov/25170157

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Whole-genome sequence assembly for mammalian genomes: Arachne 2.

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

An improved approach for construction of bacterial artificial chromosome libraries.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Comprehensive comparative analysis of strand-specific RNA sequencing methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Localizing recent adaptive evolution in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Tyrosinase gene variants in different rabbit strains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Characterization of the rabbit agouti signaling protein (ASIP) gene: transcripts and phylogenetic analyses and identification of the causative mutation of the nonagouti black coat colour

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

msABC: a modification of Hudson's ms to facilitate multi-locus ABC analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Investigation of the bottleneck leading to the domestication of maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Selection versus demography: a multilocus investigation of the domestication process in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

The effects of artificial selection on the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Grinding up wheat: a massive loss of nucleotide diversity since domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Evidence of selection at melanin synthesis pathway loci during silkworm domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Stationary distributions of microsatellite loci between divergent population groups of the European rabbit (Oryctolagus cuniculus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

On the number of segregating sites in genetical models without recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Evidence for a Common Origin of Blacksmiths and Cultivators in the Ethiopian Ari within the Last 4500 Years: Lessons for Clustering-Based Inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Recombination and speciation: loci near centromeres are more differentiated than loci near telomeres between subspecies of the European rabbit (Oryctolagus cuniculus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

The UCSC Genome Browser Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

BEDOPS: high-performance genomic feature operations

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

SIFT web server: predicting effects of amino acid substitutions on proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

A method and server for predicting damaging missense mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

A framework for variation discovery and genotyping using next-generation DNA sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Niche-independent symmetrical self-renewal of a mammalian tissue stem cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

Accuracy and coverage assessment of Oryctolagus cuniculus (rabbit) genes encoding immunoglobulins in the whole genome sequence assembly (OryCun2.0) and localization of the IGH locus to chromosome 20.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1253714

The genetics of Tourette syndrome

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25170157

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25170157

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.1253714

1 reference

28 July 2017

1 reference

28 July 2017

1 reference