PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci. (Q33651603)

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9 February 2020

review article

1 reference

title

PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci (English)

1 reference

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9 February 2020

1

1 reference

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9 February 2020

Heidi Dvinge

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20691053%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

Paul Bertone

series ordinal

4

1 reference

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9 February 2020

author name string

Kairi Tammoja

series ordinal

3

1 reference

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9 February 2020

publication date

6 August 2010

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9 February 2020

1 reference

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9 February 2020

volume

11

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9 February 2020

page(s)

415

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https://scigraph.springernature.com/pub.10.1186/1471-2105-11-415

9 February 2020

exact match

0 references

cites work

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1 reference

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BayesPeak: Bayesian analysis of ChIP-seq data

21 June 2018

1 reference

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A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

21 June 2018

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MEME SUITE: tools for motif discovery and searching

21 June 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 June 2018

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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

21 June 2018

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PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

21 June 2018

1 reference

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Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

21 June 2018

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21 June 2018

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An integrated software system for analyzing ChIP-chip and ChIP-seq data

21 June 2018

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Model-based analysis of ChIP-Seq (MACS)

21 June 2018

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Species-specific transcription in mice carrying human chromosome 21

21 June 2018

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Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

21 June 2018

1 reference

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FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

21 June 2018

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

21 June 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 June 2018

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

21 June 2018

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A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly

21 June 2018

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Genome-wide mapping of in vivo protein-DNA interactions

21 June 2018

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Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases

21 June 2018

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Practical strategies for discovering regulatory DNA sequence motifs

21 June 2018

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Limitations and potentials of current motif discovery algorithms

21 June 2018

1 reference

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A gene atlas of the mouse and human protein-encoding transcriptomes

21 June 2018

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N-myc can functionally replace c-myc in murine development, cellular growth, and differentiation

21 June 2018

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Gene-target recognition among members of the myc superfamily and implications for oncogenesis

21 June 2018

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Proteins of the Myc network: essential regulators of cell growth and differentiation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2923140

Oncogenic activity of the c-Myc protein requires dimerization with Max.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2923140

Myc family oncoproteins function through a common pathway to transform normal cells in culture: cross-interference by Max and trans-acting dominant mutants

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20691053

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-11-415

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20691053%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/Salmon-DivonDTB10

9 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20691053%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

1 reference