Mediator, TATA-binding protein, and RNA polymerase II contribute to low histone occupancy at active gene promoters in yeast (Q33652195)

24727477

28 July 2017

title

Mediator, TATA-binding protein, and RNA polymerase II contribute to low histone occupancy at active gene promoters in yeast (English)

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28 July 2017

6

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13 June 2020

Philipp Korber

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Randall H. Morse

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13 June 2020

author name string

Suraiya A Ansari

1

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13 June 2020

Emily Paul

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13 June 2020

Sebastian Sommer

3

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13 June 2020

Corinna Lieleg

4

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13 June 2020

Qiye He

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13 June 2020

Kara A Rode

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Wesley T Barber

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Laura C Ellis

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13 June 2020

Erika LaPorta

10

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13 June 2020

Amanda M Orzechowski

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13 June 2020

Emily Taylor

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13 June 2020

Tanner Reeb

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Jason Wong

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language of work or name

English

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publication date

11 April 2014

1 reference

24727477

Journal of Biological Chemistry

28 July 2017

published in

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volume

289

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issue

21

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13 June 2020

page(s)

14981-14995

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Mediator is an intrinsic component of the basal RNA polymerase II machinery in vivo.

13 June 2020

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21 June 2018

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21 June 2018

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Phosphorylated Pol II CTD Recruits Multiple HDACs, Including Rpd3C(S), for Methylation-Dependent Deacetylation of ORF Nucleosomes

21 June 2018

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Transcriptional plasticity through differential assembly of a multiprotein activation complex.

21 June 2018

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The SNF2-family member Fun30 promotes gene silencing in heterochromatic loci

21 June 2018

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High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

21 June 2018

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Mediator complex association with constitutively transcribed genes in yeast

21 June 2018

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Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters

21 June 2018

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Differential cofactor requirements for histone eviction from two nucleosomes at the yeast PHO84 promoter are determined by intrinsic nucleosome stability

21 June 2018

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The transcriptional coactivators SAGA, SWI/SNF, and mediator make distinct contributions to activation of glucose-repressed genes

21 June 2018

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The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo

21 June 2018

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Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast

21 June 2018

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Phosphorylation and functions of the RNA polymerase II CTD

21 June 2018

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Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II.

21 June 2018

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Independent recruitment of mediator and SAGA by the activator Met4

21 June 2018

1 reference

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The Spt4p subunit of yeast DSIF stimulates association of the Paf1 complex with elongating RNA polymerase II.

21 June 2018

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Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

21 June 2018

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Mediator as a general transcription factor

21 June 2018

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Interdependent recruitment of SAGA and Srb mediator by transcriptional activator Gcn4p

21 June 2018

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ATP-dependent chromatin remodeling

21 June 2018

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Global nucleosome occupancy in yeast

21 June 2018

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A triad of subunits from the Gal11/tail domain of Srb mediator is an in vivo target of transcriptional activator Gcn4p

21 June 2018

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Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes

21 June 2018

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An array of coactivators is required for optimal recruitment of TATA binding protein and RNA polymerase II by promoter-bound Gcn4p

21 June 2018

1 reference

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Two cyclin-dependent kinases promote RNA polymerase II transcription and formation of the scaffold complex

21 June 2018

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Recruitment of SWI/SNF by Gcn4p Does Not Require Snf2p or Gcn5p but Depends Strongly on SWI/SNF Integrity, SRB Mediator, and SAGA

21 June 2018

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Global analysis of protein expression in yeast

21 June 2018

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Involvement of actin-related proteins in ATP-dependent chromatin remodeling.

21 June 2018

1 reference

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Global and specific transcriptional repression by the histone H3 amino terminus in yeast

21 June 2018

1 reference

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SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery

21 June 2018

1 reference

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Functional profiling of the Saccharomyces cerevisiae genome

21 June 2018

1 reference

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TFIID and human mediator coactivator complexes assemble cooperatively on promoter DNA

21 June 2018

1 reference

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Increasing the rate of chromatin remodeling and gene activation--a novel role for the histone acetyltransferase Gcn5

21 June 2018

1 reference

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Dynamic association of capping enzymes with transcribing RNA polymerase II

21 June 2018

1 reference

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The Swi/Snf family nucleosome-remodeling complexes and transcriptional control

21 June 2018

1 reference

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Restriction nucleases as probes for chromatin structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4031549

Evidence that transcription factor IIB is required for a post-assembly step in transcription initiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4031549

Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4031549

Assays for nucleosome positioning in yeast

21 June 2018

1 reference

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Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae

21 June 2018

1 reference

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Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4031549

Absence of Gcn5 HAT activity defines a novel state in the opening of chromatin at the PHO5 promoter in yeast

21 June 2018

1 reference

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Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

21 June 2018

1 reference

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mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4031549

General requirement for RNA polymerase II holoenzymes in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4031549

Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

21 June 2018

1 reference

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Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis

21 June 2018

1 reference

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A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae

21 June 2018

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DMSO-enhanced whole cell yeast transformation

21 June 2018

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Serine and threonine catabolism in Saccharomyces cerevisiae: the CHA1 polypeptide is homologous with other serine and threonine dehydratases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4031549

The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells

21 June 2018

1 reference

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Nucleosome structure of the yeast CHA1 promoter: analysis of activation-dependent chromatin remodeling of an RNA-polymerase-II-transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators.

21 June 2018

1 reference

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Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

21 January 2018

1 reference

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The histone chaperone Asf1 increases the rate of histone eviction at the yeast PHO5 and PHO8 promoters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.529354

The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.

21 January 2018

1 reference

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A transcription-independent role for TFIIB in gene looping.

21 January 2018

1 reference

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Evidence for nucleosome depletion at active regulatory regions genome-wide

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.529354

Removal of promoter nucleosomes by disassembly rather than sliding in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.529354

Dissection of coactivator requirement at RNR3 reveals unexpected contributions from TFIID and SAGA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.529354

Using chromatin immunoprecipitation to map cotranscriptional mRNA processing in Saccharomyces cerevisiae.

21 January 2018

1 reference

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Enhancement of TBP binding by activators and general transcription factors

30 October 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.529354

Redundancy of chromatin remodeling pathways for the induction of the yeast PHO5 promoter in vivo

21 January 2018

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12 December 2020

Mediator requirement downstream of chromatin remodeling during transcriptional activation of CHA1 in yeast

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12 December 2020

A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes

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12 December 2020

Loss of resolution in gel electrophoresis of RNA: a problem associated with the presence of formaldehyde gradients

1 reference

12 December 2020

Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast

1 reference

12 December 2020

Non-random cleavage of SV40 DNA in the compact minichromosome and free in solution by micrococcal nuclease

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M113.529354

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24727477%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24727477%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

24727477

1 reference