PRIMO/PRIMONA: a coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy (Q33653515)

28 July 2017

title

PRIMO/PRIMONA: a coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy (English)

1 reference

28 July 2017

Srinivasa M Gopal

1

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28 July 2017

Shayantani Mukherjee

series ordinal

2

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28 July 2017

Yi-Ming Cheng

series ordinal

3

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28 July 2017

Michael Feig

series ordinal

4

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28 July 2017

language of work or name

English

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publication date

1 April 2010

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28 July 2017

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28 July 2017

volume

78

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28 July 2017

issue

5

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28 July 2017

page(s)

1266-1281

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

28 July 2017

cites work

1 reference

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21 June 2018

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Solvent-free lipid bilayer model using multiscale coarse-graining

21 June 2018

1 reference

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Packaging double-helical DNA into viral capsids: structures, forces, and energetics

21 June 2018

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Insights on protein-DNA recognition by coarse grain modelling

21 June 2018

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Ab initio RNA folding by discrete molecular dynamics: from structure prediction to folding mechanisms

21 June 2018

1 reference

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Ten-microsecond molecular dynamics simulation of a fast-folding WW domain

21 June 2018

1 reference

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Fast procedure for reconstruction of full-atom protein models from reduced representations.

21 June 2018

1 reference

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A coarse-grained protein force field for folding and structure prediction.

21 June 2018

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21 June 2018

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From coarse-grain to all-atom: toward multiscale analysis of protein landscapes

21 June 2018

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21 June 2018

1 reference

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Mechanical unfolding of RNA hairpins

21 June 2018

1 reference

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Protein modeling and structure prediction with a reduced representation.

21 June 2018

1 reference

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21 June 2018

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Minimalist models for protein folding and design

21 June 2018

1 reference

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Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing

21 June 2018

1 reference

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Rotamer libraries in the 21st century

21 June 2018

1 reference

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alpha-helix formation: discontinuous molecular dynamics on an intermediate-resolution protein model

21 June 2018

1 reference

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Accurate reconstruction of all-atom protein representations from side-chain-based low-resolution models

21 June 2018

1 reference

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Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

21 June 2018

1 reference

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Assembly of protein structure from sparse experimental data: an efficient Monte Carlo model

21 June 2018

1 reference

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Backbone-dependent rotamer library for proteins. Application to side-chain prediction

21 June 2018

1 reference

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Conversion from a virtual-bond chain to a complete polypeptide backbone chain.

21 June 2018

1 reference

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A 1.8 A resolution potential function for protein folding

21 June 2018

1 reference

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Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

21 June 2018

1 reference

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Computer simulation of protein folding

21 June 2018

1 reference

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Reconstructing atomistic detail for coarse-grained models with resolution exchange

21 June 2018

1 reference

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A coarse grain model for DNA.

30 October 2018

1 reference

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Stability and dynamics of virus capsids described by coarse-grained modeling

30 October 2018

1 reference

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Multiscale modeling of nucleosome dynamics

30 October 2018

1 reference

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Adaptive resolution molecular-dynamics simulation: changing the degrees of freedom on the fly.

30 October 2018

1 reference

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Improved treatment of the protein backbone in empirical force fields.

30 October 2018

1 reference

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Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

30 October 2018

1 reference

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Coarse-grained force field for the nucleosome from self-consistent multiscaling

30 October 2018

1 reference

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A coarse-grained protein-protein potential derived from an all-atom force field

30 October 2018

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12 December 2020

Peptide folding using multiscale coarse-grained models

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12 December 2020

The MARTINI Coarse-Grained Force Field: Extension to Proteins.

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12 December 2020

Is Alanine Dipeptide a Good Model for Representing the Torsional Preferences of Protein Backbones?

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12 December 2020

Identifiers

DOI

10.1002/PROT.22645

1 reference

28 July 2017

1 reference

28 July 2017

1 reference