CodonTest: modeling amino acid substitution preferences in coding sequences (Q33680623)

28 July 2017

CodonTest: modeling amino acid substitution preferences in coding sequences (English)

1 reference

Sergei L. Kosakovsky Pond

28 July 2017

Konrad Scheffler

2

0 references

series ordinal

6

object named as

Sergei L Kosakovsky Pond

1 reference

28 July 2017

5

Spencer V Muse

1 reference

28 July 2017

Wayne Delport

1

1 reference

PubMed ID

20808876

28 July 2017

Gordon Botha

series ordinal

3

1 reference

PubMed ID

20808876

28 July 2017

Mike B Gravenor

series ordinal

4

1 reference

28 July 2017

19 August 2010

1 reference

PLOS Computational Biology

28 July 2017

1 reference

28 July 2017

6

1 reference

28 July 2017

8

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

start time

19 August 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Identification of physicochemical selective pressure on protein encoding nucleotide sequences

21 June 2018

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21 June 2018

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Site-to-site variation of synonymous substitution rates

21 June 2018

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Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

21 June 2018

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Not so different after all: a comparison of methods for detecting amino acid sites under selection

21 June 2018

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21 June 2018

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Estimating the frequency of events that cause multiple-nucleotide changes

21 June 2018

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21 June 2018

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A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 June 2018

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A fast algorithm for joint reconstruction of ancestral amino acid sequences

21 June 2018

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Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.

21 June 2018

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21 June 2018

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MODELTEST: testing the model of DNA substitution

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Modeling amino acid substitution patterns in orthologous and paralogous genes.

21 January 2018

1 reference

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Solvent exposure imparts similar selective pressures across a range of yeast proteins.

21 January 2018

1 reference

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Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System

21 January 2018

1 reference

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A genetic algorithm approach to detecting lineage-specific variation in selection pressure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000885

Automated phylogenetic detection of recombination using a genetic algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000885

Evolutionary model selection with a genetic algorithm: a case study using stem RNA.

21 January 2018

1 reference

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Estimating the Dimension of a Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000885

Computational methods for evaluating phylogenetic models of coding sequence evolution with dependence between codons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000885

HIV evolution: CTL escape mutation and reversion after transmission.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000885

rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2924240

Model of amino acid substitution in proteins encoded by mitochondrial DNA

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20808876

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A new approach to clustering the amino acids

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20808876

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000885

1 reference

journals/ploscb/DelportSBGMP10

28 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference

PubMed ID

20808876