Exploring Flory's isolated-pair hypothesis: statistical mechanics of helix-coil transitions in polyalanine and the C-peptide from RNase A. (Q33713782)

28 July 2017

Exploring Flory's isolated-pair hypothesis: statistical mechanics of helix-coil transitions in polyalanine and the C-peptide from RNase A. (English)

1 reference

28 July 2017

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Y Zenmei Ohkubo

1

1 reference

PubMed ID

14615586

28 July 2017

Charles L Brooks

series ordinal

2

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PubMed ID

14615586

28 July 2017

language of work or name

English

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publication date

13 November 2003

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Proceedings of the National Academy of Sciences of the United States of America

28 July 2017

6

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based on heuristic

inferred from page(s)

published in

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28 July 2017

100

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28 July 2017

24

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28 July 2017

13916-13921

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Native-like mean structure in the unfolded ensemble of small proteins

28 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

Polyproline II structure in a sequence of seven alanine residues.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

The enthalpy of the alanine peptide helix measured by isothermal titration calorimetry using metal-binding to induce helix formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

The Flory isolated-pair hypothesis is not valid for polypeptide chains: implications for protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

Funnels, pathways, and the energy landscape of protein folding: a synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

Unusually stable helix formation in short alanine-based peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

Thermodynamics and mechanism of alpha helix initiation in alanine and valine peptides.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

Prediction of the thermodynamics of protein unfolding: the helix-coil transition of poly(L-alanine).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

Parameters of helix-coil transition theory for alanine-based peptides of varying chain lengths in water

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=283521

Persistence of native-like topology in a denatured protein in 8 M urea

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

Mapping long-range contacts in a highly unfolded protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

Replica-exchange molecular dynamics method for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

Replica Monte Carlo simulation of spin glasses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

Helix-coil transitions of amino-acid homo-oligomers in aqueous solution studied by multicanonical simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

The Key to Solving the Protein-Folding Problem Lies in an Accurate Description of the Denatured State

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

Optimized Monte Carlo data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

Simulation of activation free energies in molecular systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

A microscopic view of helix propagation: N and C-terminal helix growth in alanine helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.2334257100

The Key to Solving the Protein-Folding Problem Lies in an Accurate Description of the Denatured State Financial support from the Schweizerischer Nationalfonds (Project no. 21-50929.97) is gratefully acknowledged

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14615586

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.2334257100

1 reference

28 July 2017

0 references

1 reference

28 July 2017

1 reference

PubMed ID

14615586