Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics (Q33718729)

28 July 2017

Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics (English)

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28 July 2017

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Xiaofeng Guo

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28 July 2017

David C Trudgian

2

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28 July 2017

Andrew Lemoff

3

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28 July 2017

Sivaramakrishna Yadavalli

4

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28 July 2017

Hamid Mirzaei

5

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28 July 2017

2 April 2014

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Molecular & Cellular Proteomics

28 July 2017

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28 July 2017

13

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28 July 2017

1573-1584

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28 July 2017

6

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describes a project that uses

28 July 2017

HeLa

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cites work

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The one hour yeast proteome

21 June 2018

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Cloud CPFP: a shotgun proteomics data analysis pipeline using cloud and high performance computing

21 June 2018

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Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate

21 June 2018

1 reference

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Reorganizing the protein space at the Universal Protein Resource (UniProt)

21 June 2018

1 reference

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Deep proteome and transcriptome mapping of a human cancer cell line

21 June 2018

1 reference

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Rapid empirical discovery of optimal peptides for targeted proteomics

21 June 2018

1 reference

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Efficient marginalization to compute protein posterior probabilities from shotgun mass spectrometry data

21 June 2018

1 reference

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100% protein sequence coverage: a modern form of surrealism in proteomics

21 June 2018

1 reference

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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

21 June 2018

1 reference

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Value of using multiple proteases for large-scale mass spectrometry-based proteomics

21 June 2018

1 reference

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21 June 2018

The PeptideAtlas Project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4047476

A bayesian approach to protein inference problem in shotgun proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4047476

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

21 June 2018

1 reference

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GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

21 June 2018

1 reference

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Elastase digests: new ammunition for shotgun membrane proteomics

21 June 2018

1 reference

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Decision tree-driven tandem mass spectrometry for shotgun proteomics

21 June 2018

1 reference

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Prediction of peptides observable by mass spectrometry applied at the experimental set level

21 June 2018

1 reference

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Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

21 June 2018

1 reference

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MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

21 June 2018

1 reference

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Enhanced sequence coverage of proteins in human cerebrospinal fluid using multiple enzymatic digestion and linear ion trap LC-MS/MS.

21 June 2018

1 reference

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21 June 2018

The PeptideAtlas project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4047476

Open mass spectrometry search algorithm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4047476

TANDEM: matching proteins with tandem mass spectra

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4047476

Multiple enzymatic digestion for enhanced sequence coverage of proteins in complex proteomic mixtures using capillary LC with ion trap MS/MS.

21 June 2018

1 reference

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Shotgun identification of protein modifications from protein complexes and lens tissue

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4047476

A simple method for displaying the hydropathic character of a protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4047476

Hiding behind Hydrophobicity

21 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M113.035170

CPFP: a central proteomics facilities pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M113.035170

Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M113.035170

Characterization of a high field Orbitrap mass spectrometer for proteome analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M113.035170

Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA).

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M113.035170

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M113.035170

Consecutive proteolytic digestion in an enzyme reactor increases depth of proteomic and phosphoproteomic analysis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24696503

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Method of the Year 2012

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24696503

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Production of antipeptide antibodies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24696503

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M113.035170

1 reference

28 July 2017

1 reference

28 July 2017

1 reference