Analysis of riboswitch structure and ligand binding using small-angle X-ray scattering (SAXS) (Q33725063)

28 July 2017

title

Analysis of riboswitch structure and ligand binding using small-angle X-ray scattering (SAXS) (English)

1 reference

X-ray scattering techniques

28 July 2017

1 reference

1 reference

Nathan J Baird

1

1 reference

28 July 2017

Adrian R Ferré-D'Amaré

series ordinal

2

1 reference

28 July 2017

language of work or name

English

0 references

publication date

1 January 2014

1 reference

Methods in Molecular Biology

28 July 2017

published in

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28 July 2017

volume

1103

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28 July 2017

page(s)

211-225

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Allosteric tertiary interactions preorganize the c-di-GMP riboswitch and accelerate ligand binding

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Free State Conformational Sampling of the SAM-I Riboswitch Aptamer Domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Riboswitch function: flipping the switch or tuning the dimmer?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Small-angle scattering for structural biology--expanding the frontier while avoiding the pitfalls.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Discrimination between Closely Related Cellular Metabolites by the SAM-I Riboswitch

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

The ligand-free state of the TPP riboswitch: a partially folded RNA structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Metal ion dependence of cooperative collapse transitions in RNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Crystal structure of the lysine riboswitch regulatory mRNA element

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Improved native affinity purification of RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

UCSF Chimera--a visualization system for exploratory research and analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Changes in biomolecular conformation seen by small angle X-ray scattering

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Small angle X-ray scattering reveals a compact intermediate in RNA folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4049135

Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding

21 June 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24318897

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Time resolved SAXS and RNA folding

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24318897

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24318897

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/978-1-62703-730-3_16

1 reference

28 July 2017

1 reference

28 July 2017

1 reference