Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene (Q33741801)

29 July 2017

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene (English)

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29 July 2017

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5

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29 July 2017

4

Jennifer Harrow

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Adam Frankish

series ordinal

2

object named as

Adam Frankish

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29 July 2017

1

Mar Gonzàlez-Porta

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29 July 2017

Johan Rung

3

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29 July 2017

1 July 2013

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29 July 2017

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29 July 2017

14

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29 July 2017

7

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29 July 2017

R70

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https://scigraph.springernature.com/pub.10.1186/gb-2013-14-7-r70

29 July 2017

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21 June 2018

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21 June 2018

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Modelling and simulating generic RNA-Seq experiments with the flux simulator

21 June 2018

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21 June 2018

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Landscape of transcription in human cells

21 June 2018

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21 June 2018

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Perturbation of myelin basic protein (Mbp) splice variant expression in developing rat cerebellum following perinatal exposure to methylmercury

21 June 2018

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Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks

21 June 2018

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Detecting differential usage of exons from RNA-seq data

21 June 2018

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Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention

21 June 2018

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A quantitative atlas of polyadenylation in five mammals

21 June 2018

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Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function

21 June 2018

1 reference

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Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

21 June 2018

1 reference

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Estimation of alternative splicing variability in human populations

21 June 2018

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Reorganizing the protein space at the Universal Protein Resource (UniProt)

21 June 2018

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21 June 2018

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Cell-to-cell variability of alternative RNA splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

RNA sequencing reveals two major classes of gene expression levels in metazoan cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Proofreading and spellchecking: a two-tier strategy for pre-mRNA splicing quality control

21 June 2018

1 reference

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Defining the transcriptome and proteome in three functionally different human cell lines

21 June 2018

1 reference

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Noisy splicing drives mRNA isoform diversity in human cells.

21 June 2018

1 reference

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Analysis and design of RNA sequencing experiments for identifying isoform regulation

21 June 2018

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The European Nucleotide Archive

21 June 2018

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The adaptive significance of unproductive alternative splicing in primates.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Global regulation of alternative splicing during myogenic differentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

A global map of human gene expression

21 June 2018

1 reference

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Expansion of the eukaryotic proteome by alternative splicing

21 June 2018

1 reference

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RNA processing and its regulation: global insights into biological networks

21 June 2018

1 reference

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An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

21 June 2018

1 reference

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Estimating accuracy of RNA-Seq and microarrays with proteomics

21 June 2018

1 reference

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mRNA-Seq whole-transcriptome analysis of a single cell

21 June 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

21 June 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

RNA-Seq: a revolutionary tool for transcriptomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Alternative isoform regulation in human tissue transcriptomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

The coupling of alternative splicing and nonsense-mediated mRNA decay.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Cytoplasmic BK(Ca) channel intron-containing mRNAs contribute to the intrinsic excitability of hippocampal neurons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Computational analysis of splicing errors and mutations in human transcripts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Genetic basis of proteome variation in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

The implications of alternative splicing in the ENCODE protein complement

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

An intron with a constitutive transport element is retained in a Tap messenger RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Developmental regulation of a proinsulin messenger RNA generated by intron retention.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Quality control of messenger ribonucleoprotein particles in the nucleus and at the pore

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Function of alternative splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

An unappreciated role for RNA surveillance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Computational detection and location of transcription start sites in mammalian genomic DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4053754

Tissue-specific alternative splicing remodels protein-protein interaction networks.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2013-14-7-R70

Negative control contributes to an extensive program of meiotic splicing in fission yeast.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2013-14-7-R70

Introns within ribosomal protein genes regulate the production and function of yeast ribosomes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23815980

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2013-14-7-R70

1 reference

29 July 2017

1 reference

29 July 2017

1 reference

PubMed ID

23815980