MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. (Q33761996)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21127032%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21127032%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

2

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17 January 2020

3

Mike S M Jetten

1 reference

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17 January 2020

author name string

Fabio Gori

series ordinal

1

1 reference

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17 January 2020

Elena Marchiori

series ordinal

4

1 reference

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17 January 2020

language of work or name

English

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publication date

1 December 2010

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21127032%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

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17 January 2020

volume

27

1 reference

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17 January 2020

issue

2

1 reference

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17 January 2020

page(s)

196-203

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21127032%20AND%20SRC:MED&resulttype=core&format=json

A human gut microbial gene catalogue established by metagenomic sequencing

17 January 2020

cites work

1 reference

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22 June 2018

A primer on metagenomics

1 reference

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Galaxy: a web-based genome analysis tool for experimentalists

22 June 2018

1 reference

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A bioinformatician's guide to metagenomics

22 June 2018

1 reference

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The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

22 June 2018

1 reference

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Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Annotation of metagenome short reads using proxygenes

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Phylogenetic classification of short environmental DNA fragments

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

The human microbiome project

22 June 2018

1 reference

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Get the most out of your metagenome: computational analysis of environmental sequence data

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

What's in the mix: phylogenetic classification of metagenome sequence samples

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Metagenomic analysis of the microbial community associated with the coral Porites astreoides.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

MEGAN analysis of metagenomic data

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Identifying bacterial genes and endosymbiont DNA with Glimmer

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Using pyrosequencing to shed light on deep mine microbial ecology

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Environments shape the nucleotide composition of genomes

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Genome sequencing in microfabricated high-density picolitre reactors

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Comparative genomic structure of prokaryotes

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

DNA sequencing with chain-terminating inhibitors

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Accurate taxonomic assignment of short pyrosequencing reads.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3018814

10.1093/BIOINFORMATICS/BTQ649

30 October 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21127032%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/GoriFJM11

17 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_l7x6de2z4ndt7mrzb7xoe4yfvy

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/l7x6de2z4ndt7mrzb7xoe4yfvy

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21127032%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference