The N-terminal to C-terminal motif in protein folding and function (Q33763372)

29 July 2017

title

The N-terminal to C-terminal motif in protein folding and function (English)

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29 July 2017

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Mallela M G Krishna

1

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29 July 2017

S Walter Englander

series ordinal

2

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29 July 2017

language of work or name

English

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publication date

18 January 2005

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

102

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29 July 2017

issue

4

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29 July 2017

page(s)

1053-1058

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Differences in the folding transition state of ubiquitin indicated by phi and psi analyses

29 July 2017

cites work

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The folding transition state of the cold shock protein is strongly polarized

28 July 2018

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Transition states for protein folding have native topologies despite high structural variability

28 July 2018

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Discerning the structure and energy of multiple transition states in protein folding using psi-analysis

28 July 2018

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Cooperativity in two-state protein folding kinetics.

28 July 2018

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Intimate View of a Kinetic Protein Folding Intermediate: Residue-resolved Structure, Interactions, Stability, Folding and Unfolding Rates, Homogeneity

28 July 2018

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PISCES: a protein sequence culling server

28 July 2018

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Cooperative omega loops in cytochrome c: role in folding and function

28 July 2018

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Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: similarities and differences in the folding of homologous proteins

28 July 2018

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Secondary structures at polypeptide-chain termini and their features.

28 July 2018

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Relationship between the native-state hydrogen exchange and folding pathways of a four-helix bundle protein

28 July 2018

1 reference

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Understanding protein hydrogen bond formation with kinetic H/D amide isotope effects

28 July 2018

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The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Hydrophobic core packing in the SH3 domain folding transition state

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Mechanisms of protein folding

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

The folding nucleus of a fibronectin type III domain is composed of core residues of the immunoglobulin-like fold

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

An amino acid code for protein folding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

The SH3-fold family: experimental evidence and prediction of variations in the folding pathways

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Protein folding intermediates and pathways studied by hydrogen exchange

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Comparison of equilibrium and kinetic approaches for determining protein folding mechanisms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

28 July 2018

The Protein Data Bank

1 reference

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Experiment and theory highlight role of native state topology in SH3 folding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Amino acid composition of protein termini are biased in different manners.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Local stability and dynamics of apocytochrome b562 examined by the dependence of hydrogen exchange on hydrostatic pressure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Contact order, transition state placement and the refolding rates of single domain proteins.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Hydrogen exchange studies of protein structure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Ultrafast signals in protein folding and the polypeptide contracted state

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Molecular collapse: the rate-limiting step in two-state cytochrome c folding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

When a module is also a domain: the rôle of the N terminus in the stability and the dynamics of immunoglobulin domains from titin

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Ubiquitin-dependent protein degradation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

The N-end rule: functions, mysteries, uses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Protein folding intermediates: native-state hydrogen exchange

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Conformation of terminal regions in proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Amino and carboxy-terminal regions in globular proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Polymer principles in protein structure and stability.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Ordered Self-Assembly of Polypeptide Fragments to form Nativelike Dimeric trp Repressor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Critical nucleation size in the folding of small apparently two-state proteins

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

How do small single-domain proteins fold?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

pH-dependent stability and folding kinetics of a protein with an unusual alpha-beta topology: the C-terminal domain of the ribosomal protein L9.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

SCOP database in 2004: refinements integrate structure and sequence family data

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Protein misfolding: optional barriers, misfolded intermediates, and pathway heterogeneity

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

How cytochrome c folds, and why: submolecular foldon units and their stepwise sequential stabilization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

The equilibrium unfolding pathway of a (beta/alpha)8 barrel

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Specificity of native-like interhelical hydrophobic contacts in the apomyoglobin intermediate.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

The folding of spectrin domains II: phi-value analysis of R16.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Critical role of beta-hairpin formation in protein G folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Role of the chain termini for the folding transition state of the cold shock protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Critical side-chain interactions at a subunit interface in the Arc repressor dimer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Domain insertions in protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Unification of the folding mechanisms of non-two-state and two-state proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

The effect of boundary selection on the stability and folding of the third fibronectin type III domain from human tenascin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

The C-terminus of botulinum neurotoxin type A light chain contributes to solubility, catalysis, and stability

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Thermodynamic and kinetic exploration of the energy landscape of Borrelia burgdorferi OspA by native-state hydrogen exchange

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Im7 folding mechanism: misfolding on a path to the native state

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545867

Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics

30 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

The Largest Protein Observed To Fold by Two-State Kinetic Mechanism Does Not Obey Contact-Order Correlation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Conformational Pathway of the Polypeptide Chain of Chymotrypsin Inhibitor-2 Growing from its N Terminusin vitro. Parallels with the Protein Folding Pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

The formation of a native-like structure containing eight conserved hydrophobic residues is rate limiting in two-state protein folding of ACBP

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409114102

Structural characterization of a partly folded apomyoglobin intermediate

21 January 2018

1 reference

12 December 2020

D/H amide kinetic isotope effects reveal when hydrogen bonds form during protein folding

1 reference

12 December 2020

Formation of Randomly Paired Disulfide Bonds in Des-(121–124)-ribonuclease after Reduction and Reoxidation

1 reference

12 December 2020

The limited digestion of ribonuclease with pepsin

1 reference

12 December 2020

Involvement of the N- and C-Terminal Fragments of Bovine Pancreatic Deoxyribonuclease in Active Protein Folding†

1 reference

12 December 2020

Side chain packing of the N- and C-terminal helices plays a critical role in the kinetics of cytochrome c folding

1 reference

12 December 2020

Local dynamics and stability of apocytochrome b562 examined by hydrogen exchange

1 reference

12 December 2020

Terminal residues in protein chains: residue preference, conformation, and interaction

1 reference

12 December 2020

Implications of N and C-terminal proximity for protein folding

1 reference

12 December 2020

The barriers in protein folding

1 reference

12 December 2020

An experimental approach to the study of the folding of staphylococcal nuclease

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0409114102

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29 July 2017

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29 July 2017

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