The CTCF insulator protein forms an unusual DNA structure (Q33777418)

29 July 2017

title

The CTCF insulator protein forms an unusual DNA structure (English)

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29 July 2017

Melissa J MacPherson

1

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29 July 2017

Paul D Sadowski

series ordinal

2

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29 July 2017

publication date

21 December 2010

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29 July 2017

published in

BMC Molecular Biology

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29 July 2017

volume

11

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29 July 2017

page(s)

101

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CTCF: master weaver of the genome

29 July 2017

cites work

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An insulator element 3' to the CFTR gene binds CTCF and reveals an active chromatin hub in primary cells

4 July 2018

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CTCF-dependent enhancer-blocking by alternative chromatin loop formation

4 July 2018

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Orientation-dependent interaction between Drosophila insulators is a property of this class of regulatory elements

4 July 2018

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CTCF regulates allelic expression of Igf2 by orchestrating a promoter-polycomb repressive complex 2 intrachromosomal loop

4 July 2018

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Three-dimensional conformation at the H19/Igf2 locus supports a model of enhancer tracking

4 July 2018

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The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions

4 July 2018

1 reference

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Genetics and epigenetics of the multifunctional protein CTCF.

4 July 2018

1 reference

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Critical DNA binding interactions of the insulator protein CTCF: a small number of zinc fingers mediate strong binding, and a single finger-DNA interaction controls binding at imprinted loci

4 July 2018

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Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome

4 July 2018

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CTCF genomic binding sites in Drosophila and the organisation of the bithorax complex

4 July 2018

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High-resolution profiling of histone methylations in the human genome

4 July 2018

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Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites

4 July 2018

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

4 July 2018

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Analysis of the H19ICR insulator

4 July 2018

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CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

4 July 2018

1 reference

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CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2

4 July 2018

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DNA arms do the legwork to ensure the directionality of lambda site-specific recombination

4 July 2018

1 reference

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Regulation of the transcription factor, CTCF, by phosphorylation with protein kinase CK2.

4 July 2018

1 reference

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Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation.

4 July 2018

1 reference

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The binding sites for the chromatin insulator protein CTCF map to DNA methylation-free domains genome-wide

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

Mutation of a single CTCF target site within the H19 imprinting control region leads to loss of Igf2 imprinting and complex patterns of de novo methylation upon maternal inheritance.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

Functional phosphorylation sites in the C-terminal region of the multivalent multifunctional transcriptional factor CTCF

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

Differential effect of zinc finger deletions on the binding of CTCF to the promoter of the amyloid precursor protein gene

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

Negative transcriptional regulation mediated by thyroid hormone response element 144 requires binding of the multivalent factor CTCF to a novel target DNA sequence

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

Negative protein 1, which is required for function of the chicken lysozyme gene silencer in conjunction with hormone receptors, is identical to the multivalent zinc finger repressor CTCF.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

DNA bending by the silencer protein NeP1 is modulated by TR and RXR

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

lac repressor forms loops with linear DNA carrying two suitably spaced lac operators

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

A novel sequence-specific DNA binding protein which interacts with three regularly spaced direct repeats of the CCCTC-motif in the 5'-flanking sequence of the chicken c-myc gene

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

Modular structure of a chicken lysozyme silencer: involvement of an unusual thyroid hormone receptor binding site

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

The CTCF insulator protein is posttranslationally modified by SUMO.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3014928

The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences

30 October 2018

1 reference

12 December 2020

The direction of RecA protein assembly onto single strand DNA is the same as the direction of strand assimilation during strand exchange

1 reference

12 December 2020

DNA bend direction by phase sensitive detection

1 reference

12 December 2020

Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector

1 reference

12 December 2020

1 reference

12 December 2020

Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylation-sensitive

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2199-11-101

1 reference

Dimensions Publication ID

29 July 2017

0 references

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29 July 2017

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