PNAC: a protein nucleolar association classifier. (Q33805360)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272300%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

title

PNAC: a protein nucleolar association classifier (English)

1 reference

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21 January 2020

author

Francois-Michel Boisvert

2

1 reference

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21 January 2020

Angus Lamond

3

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21 January 2020

Geoffrey J. Barton

4

1 reference

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21 January 2020

author name string

Michelle S Scott

1

1 reference

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21 January 2020

language of work or name

English

0 references

publication date

27 January 2011

1 reference

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21 January 2020

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21 January 2020

volume

12

1 reference

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21 January 2020

page(s)

74

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Characterization and prediction of protein nucleolar localization sequences.

21 January 2020

cites work

1 reference

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The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression

4 July 2018

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A quantitative proteomics analysis of subcellular proteome localization and changes induced by DNA damage.

4 July 2018

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The IntAct molecular interaction database in 2010

4 July 2018

1 reference

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The Universal Protein Resource (UniProt) in 2010

4 July 2018

1 reference

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Predicting protein subnuclear localization using GO-amino-acid composition features.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

In search of nonribosomal nucleolar protein function and regulation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Protein-protein interaction as a predictor of subcellular location

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

A method to improve protein subcellular localization prediction by integrating various biological data sources

4 July 2018

1 reference

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Human Protein Reference Database--2009 update

4 July 2018

1 reference

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PIPs: human protein-protein interaction prediction database

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

The GOA database in 2009--an integrated Gene Ontology Annotation resource

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

NCBI GEO: archive for high-throughput functional genomic data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Nucleolus: the fascinating nuclear body

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Toward a confocal subcellular atlas of the human proteome

4 July 2018

1 reference

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Probabilistic prediction and ranking of human protein-protein interactions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

The multifunctional nucleolus

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

An inventory of yeast proteins associated with nucleolar and ribosomal components

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

An SVM-based system for predicting protein subnuclear localizations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Refining protein subcellular localization

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Predicting protein subcellular localization: past, present, and future.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Nucleolar proteome dynamics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Inparanoid: a comprehensive database of eukaryotic orthologs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Predicting protein localization in budding yeast

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

The International Protein Index: an integrated database for proteomics experiments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

A gene atlas of the mouse and human protein-encoding transcriptomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Nucleolar localization of RPS19 protein in normal cells and mislocalization due to mutations in the nucleolar localization signals in 2 Diamond-Blackfan anemia patients: potential insights into pathophysiology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Functional proteomic analysis of human nucleolus

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Conventional and nonconventional roles of the nucleolus

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Directed proteomic analysis of the human nucleolus

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

High mobility of proteins in the mammalian cell nucleus

4 July 2018

1 reference

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The nucleolus: an old factory with unexpected capabilities

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Growth factors in the nucleolus?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

The plurifunctional nucleolus

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Characterization of the thermotolerant cell. II. Effects on the intracellular distribution of heat-shock protein 70, intermediate filaments, and small nuclear ribonucleoprotein complexes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3038921

Predicting 22 protein localizations in budding yeast.

4 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-74

ProLoc: prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-74

A wiring of the human nucleolus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-74

Determining nucleolar association from sequence by leveraging protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-74

Identification of novel nuclear export and nuclear localization-related signals in human heat shock cognate protein 70.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-74

21 January 2018

Identifiers

DOI

10.1186/1471-2164-12-74

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272300%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

21 January 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-74

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21272300%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

PubMed publication ID

21272300

1 reference