pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires (Q33807674)

29 July 2017

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires (English)

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high-throughput sequencing

29 July 2017

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Gur Yaari

2

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David A. Hafler

6

object named as

David A Hafler

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29 July 2017

Jason A Vander Heiden

1

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29 July 2017

Mohamed Uduman

3

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29 July 2017

Joel N H Stern

4

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29 July 2017

Kevin C O'Connor

5

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29 July 2017

Francois Vigneault

7

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29 July 2017

Steven H Kleinstein

8

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29 July 2017

language of work or name

English

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publication date

10 March 2014

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29 July 2017

3

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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29 July 2017

30

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29 July 2017

13

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29 July 2017

1930-1932

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Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071206

Genetic measurement of memory B-cell recall using antibody repertoire sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071206

IgBLAST: an immunoglobulin variable domain sequence analysis tool

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071206

Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071206

Quantifying selection in high-throughput Immunoglobulin sequencing data sets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071206

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071206

Rep-Seq: uncovering the immunological repertoire through next-generation sequencing.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071206

Clustering-based identification of clonally-related immunoglobulin gene sequence sets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071206

iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071206

SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4071206

IgTree: creating Immunoglobulin variable region gene lineage trees.

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU138

The inference of phased haplotypes for the immunoglobulin H chain V region gene loci by analysis of VDJ gene rearrangements.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU138

10.1093/BIOINFORMATICS/BTU138

21 January 2018

Identifiers

DOI

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journals/bioinformatics/HeidenYUSOHVK14

29 July 2017

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

29 July 2017

1 reference