Backbone additivity in the transfer model of protein solvation (Q33844255)

29 July 2017

title

Backbone additivity in the transfer model of protein solvation (English)

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29 July 2017

Char Y Hu

1

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29 July 2017

Hironori Kokubo

2

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29 July 2017

Gillian C Lynch

3

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29 July 2017

D Wayne Bolen

4

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29 July 2017

B Montgomery Pettitt

5

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29 July 2017

publication date

1 May 2010

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29 July 2017

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29 July 2017

volume

19

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29 July 2017

issue

5

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29 July 2017

page(s)

1011-1022

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

29 July 2017

cites work

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Trimethylamine N-oxide influence on the backbone of proteins: an oligoglycine model

28 July 2018

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Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding

28 July 2018

1 reference

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Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model

28 July 2018

1 reference

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Structure and energetics of the hydrogen-bonded backbone in protein folding.

28 July 2018

1 reference

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Anatomy of energetic changes accompanying urea-induced protein denaturation.

28 July 2018

1 reference

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Preferential solvation in urea solutions at different concentrations: properties from simulation studies

28 July 2018

1 reference

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The role of water coordination in binary mixtures. A study of two model amphiphilic molecules in aqueous solutions by molecular dynamics and NMR.

28 July 2018

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TMAO promotes fibrillization and microtubule assembly activity in the C-terminal repeat region of tau.

28 July 2018

1 reference

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Predicting the energetics of osmolyte-induced protein folding/unfolding.

28 July 2018

1 reference

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Osmolyte trimethylamine-N-oxide does not affect the strength of hydrophobic interactions: origin of osmolyte compatibility

28 July 2018

1 reference

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The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

The molecular mechanism of stabilization of proteins by TMAO and its ability to counteract the effects of urea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Osmolyte-driven contraction of a random coil protein

28 July 2018

1 reference

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Trimethylamine-N-oxide counteracts urea effects on rabbit muscle lactate dehydrogenase function: a test of the counteraction hypothesis

28 July 2018

1 reference

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A naturally occurring protective system in urea-rich cells: mechanism of osmolyte protection of proteins against urea denaturation

28 July 2018

1 reference

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Molecular dynamics simulations of the unfolding of barnase in water and 8 M aqueous urea

28 July 2018

1 reference

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Chemical chaperones interfere with the formation of scrapie prion protein

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

The stabilization of proteins by sucrose

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Living with water stress: evolution of osmolyte systems

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Urea and guanidine hydrochloride denaturation of ribonuclease, lysozyme, alpha-chymotrypsin, and beta-lactoglobulin.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Water as ligand: preferential binding and exclusion of denaturants in protein unfolding

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Counteraction of urea destabilization of protein structure by methylamine osmoregulatory compounds of elasmobranch fishes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Urea-mediated protein denaturation: a consensus view

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Correction of the disease phenotype of myocilin-causing glaucoma by a natural osmolyte

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Rescue of the neuroblastoma mutant of the human nucleoside diphosphate kinase A/nm23-H1 by the natural osmolyte trimethylamine-N-oxide.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Role of backbone-solvent interactions in determining conformational equilibria of intrinsically disordered proteins

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Interaction of urea with amino acids: implications for urea-induced protein denaturation

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Molecular basis of the apparent near ideality of urea solutions

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Interactions between hydrophobic and ionic solutes in aqueous guanidinium chloride and urea solutions: lessons for protein denaturation mechanism.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

A backbone-based theory of protein folding

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Comparison of efficiency and bias of free energies computed by exponential averaging, the Bennett acceptance ratio, and thermodynamic integration

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Solvation free energies of amino acid side chain analogs for common molecular mechanics water models.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Additive transfer free energies of the peptide backbone unit that are independent of the model compound and the choice of concentration scale

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

The dominant interaction between peptide and urea is electrostatic in nature: a molecular dynamics simulation study

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

The osmophobic effect: natural selection of a thermodynamic force in protein folding

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Are Solvation Free Energies of Homogeneous Helical Peptides Additive?

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2868243

Limited validity of group additivity for the folding energetics of the peptide group

29 October 2018

1 reference

12 December 2020

THE EFFECT OF COMPOUNDS OF THE UREA-GUANIDINIUM CLASS ON THE ACTIVITY COEFFICIENT OF ACETYLTETRAGLYCINE ETHYL ESTER AND RELATED COMPOUNDS

1 reference

12 December 2020

Modulation of Hydrophobic Effect by Cosolutes

1 reference

12 December 2020

The peptide backbone plays a dominant role in protein stabilization by naturally occurring osmolytes

1 reference

12 December 2020

Why tert-butyl alcohol associates in aqueous solution but trimethylamine-N-oxide does not

1 reference

12 December 2020

THE SOLUBILITY OF AMINO ACIDS AND RELATED COMPOUNDS IN AQUEOUS UREA SOLUTIONS

1 reference

12 December 2020

Osmolyte trimethylamine N-oxide converts recombinant alpha-helical prion protein to its soluble beta-structured form at high temperature

1 reference

12 December 2020

Forcing thermodynamically unfolded proteins to fold

1 reference

12 December 2020

Structural details of urea binding to barnase: a molecular dynamics analysis

1 reference

12 December 2020

Why do some organisms use a urea-methylamine mixture as osmolyte? Thermodynamic compensation of urea and trimethylamine N-oxide interactions with protein

1 reference

12 December 2020

Identifiers

DOI

10.1002/PRO.378

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29 July 2017

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29 July 2017

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