FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens (Q33874270)

29 July 2017

title

FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens (English)

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29 July 2017

main subject

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5 February 2019

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Putative glycophosphatidylinositol (GPI)-anchored cell wall protein

5 February 2019

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Putative glycophosphatidylinositol (GPI)-anchored cell wall protein

5 February 2019

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Predicted adhesin-like protein, ortholog of A. nidulans AN5993

5 February 2019

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5 February 2019

Putative adhesin protein

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6 February 2019

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6 February 2019

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Laminin-binding protein with extracellular thaumatin domain

6 February 2019

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Extracellular chitosanase

6 February 2019

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Putative glycophosphatidylinositol (GPI) anchored protein

6 February 2019

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6 February 2019

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Putative GPI-anchored protein

6 February 2019

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6 February 2019

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Putative cell wall glucanase

6 February 2019

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6 February 2019

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Predicted repeat rich glycophosphatidylinositol (GPI)-anchored cell wall protein

6 February 2019

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6 February 2019

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Putative pectinesterase

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6 February 2019

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Putative GPI-anchored adhesin-like protein

6 February 2019

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Predicted adhesin-like protein, ortholog of A. nidulans AN3258

6 February 2019

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6 February 2019

Rupanjali Chaudhuri

1

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29 July 2017

Faraz Alam Ansari

series ordinal

2

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29 July 2017

Muthukurussi Varieth Raghunandanan

series ordinal

3

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29 July 2017

Srinivasan Ramachandran

series ordinal

4

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29 July 2017

language of work or name

English

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publication date

15 April 2011

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29 July 2017

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29 July 2017

volume

12

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29 July 2017

page(s)

192

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Education resources of the National Center for Biotechnology Information

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

FaaPred: a SVM-based prediction method for fungal adhesins and adhesin-like proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Acute disseminated paracoccidioidomycosis in a 3 year-old child

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Extreme polymorphism in a vaccine antigen and risk of clinical malaria: implications for vaccine development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Pathogenesis of Aspergillus fumigatus in Invasive Aspergillosis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Identification and characterization of a laminin-binding protein of Aspergillus fumigatus: extracellular thaumatin domain protein (AfCalAp).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Blastomycosis: new insights into diagnosis, prevention, and treatment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Paracoccidioides brasiliensis vaccine formulations based on the gp43-derived P10 sequence and the Salmonella enterica FliC flagellin.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

MalVac: database of malarial vaccine candidates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Functional analysis of Candida albicans GPI-anchored proteins: roles in cell wall integrity and caspofungin sensitivity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Immune epitope database analysis resource (IEDB-AR).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Fungal vaccines: real progress from real challenges

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Candida albicans Sun41p, a putative glycosidase, is involved in morphogenesis, cell wall biogenesis, and biofilm formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Clustal W and Clustal X version 2.0

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

A biochemical guide to yeast adhesins: glycoproteins for social and antisocial occasions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Current insights into the biology and pathogenesis of Pneumocystis pneumonia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Epidemiology of invasive candidiasis: a persistent public health problem

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Comprehensive analysis of glycosylphosphatidylinositol-anchored proteins in Candida albicans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Advances in combating fungal diseases: vaccines on the threshold

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Epidemiologic, clinical, and diagnostic aspects of coccidioidomycosis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Prediction of residues in discontinuous B-cell epitopes using protein 3D structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

AlgPred: prediction of allergenic proteins and mapping of IgE epitopes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

The anti-Candida vaccine based on the recombinant N-terminal domain of Als1p is broadly active against disseminated candidiasis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Flocculation, adhesion and biofilm formation in yeasts.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Progress in vaccination for histoplasmosis and blastomycosis: coping with cellular immunity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

ROCR: visualizing classifier performance in R

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

PatMatch: a program for finding patterns in peptide and nucleotide sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

CDD: a Conserved Domain Database for protein classification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Systematic identification in silico of covalently bound cell wall proteins and analysis of protein-polysaccharide linkages of the human pathogen Candida glabrata.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Improved prediction of signal peptides: SignalP 3.0

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

A parasitic phase-specific adhesin of Coccidioides immitis contributes to the virulence of this respiratory Fungal pathogen

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Selection in the evolution of gene duplications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

BETAWRAP: successful prediction of parallel beta -helices from primary sequence reveals an association with many microbial pathogens

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

The ALS gene family of Candida albicans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

A major cell surface antigen of Coccidioides immitis which elicits both humoral and cellular immune responses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Biosynthesis of glycosylphosphatidylinositols in mammals and unicellular microbes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Adhesins as targets for vaccine development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Aspergillus fumigatus and aspergillosis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Immunogenicity and protective efficacy of the WI-1 adhesin of Blastomyces dermatitidis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

FLO11, a yeast gene related to the STA genes, encodes a novel cell surface flocculin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

A simple method for displaying the hydropathic character of a protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

A semi-empirical method for prediction of antigenic determinants on protein antigens

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Methods and algorithms for statistical analysis of protein sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3224177

5 July 2018

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

Invasive Candida species infection: the importance of adequate empirical antifungal therapy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

The anti-Candida albicans vaccine composed of the recombinant N terminus of Als1p reduces fungal burden and improves survival in both immunocompetent and immunocompromised mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

MAAP: malarial adhesins and adhesin-like proteins predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

The PA14 domain, a conserved all-beta domain in bacterial toxins, enzymes, adhesins and signaling molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

Genome-wide identification of fungal GPI proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

Disruption of the GPI protein-encoding gene IFF4 of Candida albicans results in decreased adherence and virulence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

Complementary adhesin function in C. albicans biofilm formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

Expression and characterization of the flocculin Flo11/Muc1, a Saccharomyces cerevisiae mannoprotein with homotypic properties of adhesion

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

Prediction of continuous B-cell epitopes in an antigen using recurrent neural network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

Prediction methods for B-cell epitopes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

ProPred: prediction of HLA-DR binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-192

21 January 2018

1 reference

12 December 2020

DNA-based vaccination against murine paracoccidioidomycosis using the gp43 gene from paracoccidioides brasiliensis

1 reference

12 December 2020

Broad institute: bringing genomics to real-world medicine

1 reference

12 December 2020

Requisite elements in vaccine immunity to Blastomyces dermatitidis: plasticity uncovers vaccine potential in immune-deficient hosts

1 reference

12 December 2020

Molecular phylogenetics of ascomycotal adhesins--a novel family of putative cell-surface adhesive proteins in fission yeasts

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-12-192

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

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