IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similarities (Q33880325)

29 July 2017

IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similarities (English)

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29 July 2017

5

Johann Gasteiger

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29 July 2017

3

Sascha Bulik

1 reference

29 July 2017

1

Kristian Rother

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29 July 2017

Sabrina Hoffmann

2

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29 July 2017

Andreas Hoppe

series ordinal

4

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29 July 2017

Herrmann-Georg Holzhütter

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6

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29 July 2017

language of work or name

English

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publication date

1 June 2010

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29 July 2017

9

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inferred from page(s)

published in

Biophysical Journal

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29 July 2017

98

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29 July 2017

11

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29 July 2017

2478-2486

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iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Metabolic flux analysis in plants: coping with complexity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Thermodynamic analysis of biodegradation pathways

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Chemical Descriptors Library (CDL): a generic, open source software library for chemical informatics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Group contribution method for thermodynamic analysis of complex metabolic networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Toward a biomechanical understanding of whole bacterial cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

KEGG for linking genomes to life and the environment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Thermodynamics-based metabolic flux analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Systematic assignment of thermodynamic constraints in metabolic network models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

The University of Minnesota Biocatalysis/Biodegradation Database: the first decade

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Thermodynamics of enzyme-catalyzed reactions--a database for quantitative biochemistry

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Development and testing of a general amber force field

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Reoptimization of MDL keys for use in drug discovery

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Bayesian inference of phylogeny and its impact on evolutionary biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Measuring diversity: experimental design of combinatorial libraries for drug discovery

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Estimation of standard Gibbs energy changes of biotransformations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Investigations of enzyme-catalyzed reactions based on physicochemical descriptors applied to hydrolases.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Using atom mapping rules for an improved detection of relevant routes in weighted metabolic networks.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Formulating genome-scale kinetic models in the post-genome era.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Descriptor collision and confusion: toward the design of descriptors to mask chemical structures.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Metabolic network structure determines key aspects of functionality and regulation

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Thermodynamics of reactions catalyzed by PABA synthase

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

How reliable are thermodynamic feasibility statements of biochemical pathways?

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877342

Thermodynamics of reactions catalyzed by anthranilate synthase

29 October 2018

1 reference

12 December 2020

Enabling the exploration of biochemical pathways

1 reference

12 December 2020

The effect of oxygen on biochemical networks and the evolution of complex life

1 reference

12 December 2020

Group contributions for estimating standard gibbs energies of formation of biochemical compounds in aqueous solution

1 reference

12 December 2020

Use of mathematical models for predicting the metabolic effect of large-scale enzyme activity alterations. Application to enzyme deficiencies of red blood cells

1 reference

12 December 2020

Random Forests

1 reference

Astrophysics Data System

15 December 2022

https://ui.adsabs.harvard.edu/abs/2001MachL..45....5B/citations

Approaches to Measure Chemical Similarity– a Review

1 reference

COCI

https://opencitations.net/index/api/v1/citations/10.1002/QSAR.200330831

10.1016/J.BPJ.2010.02.052

18 January 2024

Identifiers

DOI

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29 July 2017

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29 July 2017

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