MOTIF-EM: an automated computational tool for identifying conserved regions in CryoEM structures (Q33896257)

29 July 2017

title

MOTIF-EM: an automated computational tool for identifying conserved regions in CryoEM structures (English)

1 reference

29 July 2017

2

Michael Levitt

1 reference

29 July 2017

3

Wah Chiu

1 reference

29 July 2017

Mitul Saha

1

1 reference

29 July 2017

language of work or name

English

0 references

publication date

1 June 2010

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29 July 2017

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29 July 2017

volume

26

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29 July 2017

issue

12

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29 July 2017

page(s)

i301-9

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Computational approaches for automatic structural analysis of large biomolecular complexes.

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

JADAS: a customizable automated data acquisition system and its application to ice-embedded single particles

5 July 2018

1 reference

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De novo backbone trace of GroEL from single particle electron cryomicroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Identification of secondary structure elements in intermediate-resolution density maps

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Structural biology of cellular machines

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Electron cryomicroscopy of single particles at subnanometer resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

UCSF Chimera--a visualization system for exploratory research and analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Seeing GroEL at 6 A resolution by single particle electron cryomicroscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Locking and unlocking of ribosomal motions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Using situs for flexible and rigid-body fitting of multiresolution single-molecule data

5 July 2018

1 reference

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Bridging the information gap: computational tools for intermediate resolution structure interpretation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Docking structures of domains into maps from cryo-electron microscopy using local correlation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

EMAN: semiautomated software for high-resolution single-particle reconstructions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Fast fitting of atomic structures to low-resolution electron density maps by surface overlap maximization.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Docking of atomic models into reconstructions from electron microscopy

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881380

Combining Electron Microscopic with X-Ray Crystallographic Structures

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20529921

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Distinctive Image Features from Scale-Invariant Keypoints

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1093/BIOINFORMATICS/BTQ195

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1093/BIOINFORMATICS/BTQ195

Identifiers

DOI

10.1093/BIOINFORMATICS/BTQ195

1 reference

journals/bioinformatics/SahaLC10

29 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_gitcpe66erexvojwbac7wt6jpq

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/gitcpe66erexvojwbac7wt6jpq

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

2881380

1 reference

29 July 2017

1 reference