StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase (Q33920380)

30 July 2017

StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase (English)

1 reference

30 July 2017

4

Raul Andino

1 reference

30 July 2017

Adam T Zemla

1

1 reference

30 July 2017

Dorothy M Lang

series ordinal

2

1 reference

30 July 2017

Tanya Kostova

series ordinal

3

1 reference

30 July 2017

Carol L Ecale Zhou

series ordinal

5

1 reference

30 July 2017

2 June 2011

1 reference

30 July 2017

1 reference

30 July 2017

12

1 reference

30 July 2017

226

1 reference

Creative Commons Attribution 2.0 Generic

30 July 2017

start time

2 June 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-12-226

0 references

cites work

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1 reference

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Iterative refinement of structure-based sequence alignments by Seed Extension

5 July 2018

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Local alignment refinement using structural assessment

5 July 2018

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Matt: local flexibility aids protein multiple structure alignment.

5 July 2018

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STRALCP--structure alignment-based clustering of proteins

5 July 2018

1 reference

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Topology independent protein structural alignment.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Comparative analysis of protein structure alignments

5 July 2018

1 reference

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firestar--prediction of functionally important residues using structural templates and alignment reliability

5 July 2018

1 reference

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The structure of a birnavirus polymerase reveals a distinct active site topology

5 July 2018

1 reference

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Crystal Structure of Poliovirus 3CD Protein: Virally Encoded Protease and Precursor to the RNA-Dependent RNA Polymerase

5 July 2018

1 reference

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Connectivity independent protein-structure alignment: a hierarchical approach.

5 July 2018

1 reference

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EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Automated clustering of ensembles of alternative models in protein structure databases.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Structural basis for proteolysis-dependent activation of the poliovirus RNA-dependent RNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

The structure of the RNA-dependent RNA polymerase from bovine viral diarrhea virus establishes the role of GTP in de novo initiation

5 July 2018

1 reference

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Structural proteomics: a tool for genome annotation

5 July 2018

1 reference

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Molecular model of SARS coronavirus polymerase: implications for biochemical functions and drug design

5 July 2018

1 reference

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Flexible structure alignment by chaining aligned fragment pairs allowing twists

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Common Structural Cliques: a tool for protein structure and function analysis.

5 July 2018

1 reference

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LGA: A method for finding 3D similarities in protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

A single mutation in poliovirus RNA-dependent RNA polymerase confers resistance to mutagenic nucleotide analogs via increased fidelity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

A structural and primary sequence comparison of the viral RNA-dependent RNA polymerases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

A mechanism for initiating RNA-dependent RNA polymerization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Oligomeric structures of poliovirus polymerase are important for function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Poliovirus RNA-dependent RNA polymerase (3Dpol): structural, biochemical, and biological analysis of conserved structural motifs A and B

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Crystal structure of the RNA-dependent RNA polymerase from hepatitis C virus reveals a fully encircled active site

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Twilight zone of protein sequence alignments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Structure of the RNA-dependent RNA polymerase of poliovirus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Circular permutations of natural protein sequences: structural evidence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Mutation of lysine residues in the nucleotide binding segments of the poliovirus RNA-dependent RNA polymerase.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

The structural alignment between two proteins: is there a unique answer?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Clustered charged-to-alanine mutagenesis of poliovirus RNA-dependent RNA polymerase yields multiple temperature-sensitive mutants defective in RNA synthesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

SCOP: a structural classification of proteins database for the investigation of sequences and structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Effects of mutations in poliovirus 3Dpol on RNA polymerase activity and on polyprotein cleavage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

Structure of foot-and-mouth disease virus RNA-dependent RNA polymerase and its complex with a template-primer RNA.

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-12-226

Flexible protein alignment and hinge detection

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3121648

29 October 2018

Identifiers

DOI

10.1186/1471-2105-12-226

1 reference

journals/bmcbi/ZemlaLKAZ11

30 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1005369307

0 references

Fatcat ID

release_av3y5y36xbg5fod5xp52y4qqqe

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/av3y5y36xbg5fod5xp52y4qqqe

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3121648

1 reference

30 July 2017

1 reference