Gene and context: integrative approaches to genome analysis (Q33928603)

30 July 2017

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title

Gene and context: integrative approaches to genome analysis (English)

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30 July 2017

Huynen MA

1

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PubMed ID

10829232

30 July 2017

Snel B

series ordinal

2

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30 July 2017

1 January 2000

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Advances in Protein Chemistry

30 July 2017

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30 July 2017

54

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30 July 2017

345-379

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A hydrogenosome with a genome.

30 July 2017

1 reference

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7 January 2021

Identification of a ribonuclease H gene in both Mycoplasma genitalium and Mycoplasma pneumoniae by a new method for exhaustive identification of ORFs in the complete genome sequences

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7 January 2021

Phylogenetic relationships and evolution of the KNOTTED class of plant homeodomain proteins

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7 January 2021

Predicting function: from genes to genomes and back

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7 January 2021

Intrinsic and extrinsic approaches for detecting genes in a bacterial genome

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7 January 2021

Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

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7 January 2021

Genome sequence of the nematode C. elegans: a platform for investigating biology

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7 January 2021

From analysis to synthesis: new ligand binding sites on the lactate dehydrogenase framework. Part II.

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7 January 2021

Malate/lactate dehydrogenase in mollicutes: evidence for a multienzyme protein

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7 January 2021

Cloning and characterization of Helicobacter pylori succinyl CoA:acetoacetate CoA-transferase, a novel prokaryotic member of the CoA-transferase family

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7 January 2021

Conservation of gene order: a fingerprint of proteins that physically interact

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7 January 2021

The complete genome of the hyperthermophilic bacterium Aquifex aeolicus

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7 January 2021

The two-component signaling pathway of bacterial chemotaxis: a molecular view of signal transduction by receptors, kinases, and adaptation enzymes

1 reference

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7 January 2021

Evolution of the structure and chromosomal distribution of histidine biosynthetic genes.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954010-8

7 January 2021

Distinguishing Homologous from Analogous Proteins

1 reference

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7 January 2021

Construction of phylogenetic trees

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7 January 2021

A computer program for aligning a cDNA sequence with a genomic DNA sequence

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7 January 2021

Evidence for an incomplete reductive carboxylic acid cycle in Methanobacterium thermoautotrophicum

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7 January 2021

Constructing multigenome views of whole microbial genomes.

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7 January 2021

Sequence analysis of an exceptionally conserved operon suggests enzymes for a new link between histidine and purine biosynthesis

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7 January 2021

Analogous enzymes: independent inventions in enzyme evolution

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7 January 2021

Citrate synthase and 2-methylcitrate synthase: structural, functional and evolutionary relationships

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7 January 2021

Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution

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7 January 2021

Thiol:fumarate reductase (Tfr) from Methanobacterium thermoautotrophicum--identification of the catalytic sites for fumarate reduction and thiol oxidation

1 reference

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7 January 2021

Properties and primary structure of the L-malate dehydrogenase from the extremely thermophilic archaebacterium Methanothermus fervidus

1 reference

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7 January 2021

Propionate catabolism in Salmonella typhimurium LT2: two divergently transcribed units comprise the prp locus at 8.5 centisomes, prpR encodes a member of the sigma-54 family of activators, and the prpBCDE genes constitute an operon

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954010-8

7 January 2021

Differential genome display

1 reference

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7 January 2021

Variation and evolution of the citric-acid cycle: a genomic perspective.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954010-8

7 January 2021

Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954010-8

7 January 2021

A succinate dehydrogenase with novel structure and properties from the hyperthermophilic archaeon Sulfolobus acidocaldarius: genetic and biophysical characterization

1 reference

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7 January 2021

Multiple sequence alignment with Clustal X

1 reference

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7 January 2021

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

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https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954010-8

7 January 2021

Dynamic bacterial genome organization

1 reference

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7 January 2021

Non-orthologous gene displacement

1 reference

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7 January 2021

Amelioration of bacterial genomes: rates of change and exchange

1 reference

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7 January 2021

Metabolic studies on Saccharomyces cerevisiae containing fused citrate synthase/malate dehydrogenase

1 reference

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7 January 2021

A new version of the RDP (Ribosomal Database Project).

1 reference

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7 January 2021

Detecting protein function and protein-protein interactions from genome sequences

1 reference

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7 January 2021

Evidence for horizontal gene transfer in Escherichia coli speciation

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7 January 2021

Overview of the yeast genome.

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7 January 2021

Gene order is not conserved in bacterial evolution

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7 January 2021

The winds of (evolutionary) change: breathing new life into microbiology

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7 January 2021

Microbial genome analyses: global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities

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7 January 2021

Enzyme/crystallins: gene sharing as an evolutionary strategy

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7 January 2021

The tricarboxylic acid cycle of Helicobacter pylori

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7 January 2021

Systems for categorizing functions of gene products.

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7 January 2021

CheC and CheD interact to regulate methylation of Bacillus subtilis methyl-accepting chemotaxis proteins

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7 January 2021

The bacterial 'enigma': cracking the code of cell-cell communication

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7 January 2021

pH profiles and isotope effects for aconitases from Saccharomycopsis lipolytica, beef heart, beef liver. .alpha.-Methyl-cis-aconitate and threo-Ds-.alpha.-methylisocitrate as substrates

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7 January 2021

MPW: the Metabolic Pathways Database

1 reference

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7 January 2021

A reconstruction of the metabolism of Methanococcus jannaschii from sequence data.

1 reference

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7 January 2021

Pathway of acetate assimilation in autotrophic and heterotrophic methanococci

1 reference

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7 January 2021

Genome phylogeny based on gene content

1 reference

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7 January 2021

Biochemical and phylogenetic characterization of isocitrate dehydrogenase from a hyperthermophilic archaeon, Archaeoglobus fulgidus

1 reference

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7 January 2021

The organization and transcription of the galactose gene cluster of Saccharomyces

1 reference

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7 January 2021

Regulation of the glyoxylate bypass operon: cloning and characterization of iclR

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954010-8

7 January 2021

Conserved clusters of functionally related genes in two bacterial genomes.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954010-8

7 January 2021

A genomic perspective on protein families

1 reference

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7 January 2021

Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli

1 reference

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7 January 2021

Structures and functions of four anabolic 2-oxoacid oxidoreductases in Methanobacterium thermoautotrophicum

1 reference

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7 January 2021

Propionate oxidation in Escherichia coli: evidence for operation of a methylcitrate cycle in bacteria.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954010-8

7 January 2021

Genome plasticity as a paradigm of eubacteria evolution.

1 reference

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7 January 2021

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1 reference

7 January 2021

Helicobacter pylori porCDAB and oorDABC genes encode distinct pyruvate:flavodoxin and 2-oxoglutarate:acceptor oxidoreductases which mediate electron transport to NADP

1 reference

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7 January 2021

Studies of regulation of expression of the propionate (prpBCDE) operon provide insights into how Salmonella typhimurium LT2 integrates its 1,2-propanediol and propionate catabolic pathways

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2800%2954010-8

7 January 2021

10.1016/S0065-3233(00)54010-8

Identifiers

DOI

1 reference

30 July 2017

1 reference

PubMed ID

10829232