Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi. (Q33931101)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21668986%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

title

Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21668986%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

0 references

Pyrococcus abyssi

1 reference

based on heuristic

inferred from title

author

Agamemnon J Carpousis

5

1 reference

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4 February 2020

Béatrice Clouet-d'Orval

7

1 reference

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4 February 2020

author name string

Kounthéa Phok

1

1 reference

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4 February 2020

Annick Moisan

2

1 reference

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4 February 2020

Dana Rinaldi

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21668986%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

Nicolas Brucato

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21668986%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

Christine Gaspin

6

1 reference

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4 February 2020

language of work or name

English

0 references

publication date

13 June 2011

1 reference

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4 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21668986%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

volume

12

1 reference

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4 February 2020

page(s)

312

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21668986%20AND%20SRC:MED&resulttype=core&format=json

An expanding universe of small proteins

4 February 2020

cites work

1 reference

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5 July 2018

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A structural database for k-turn motifs in RNA.

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Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins

5 July 2018

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5 July 2018

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Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

5 July 2018

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The CRISPR system: small RNA-guided defense in bacteria and archaea

5 July 2018

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5 July 2018

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CRISPR/Cas, the immune system of bacteria and archaea

5 July 2018

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5 July 2018

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RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex

5 July 2018

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A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes

5 July 2018

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The role of mRNA structure in translational control in bacteria

5 July 2018

1 reference

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A single-base resolution map of an archaeal transcriptome

5 July 2018

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5 July 2018

Microbial thermosensors.

1 reference

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Small RNAs in haloarchaea: identification, differential expression and biological function

5 July 2018

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The structural and functional diversity of metabolite-binding riboswitches

5 July 2018

1 reference

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Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA

5 July 2018

1 reference

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Regulatory RNAs in bacteria

5 July 2018

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CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties

5 July 2018

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RNA degradation in Archaea and Gram-negative bacteria different from Escherichia coli

5 July 2018

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Small silencing RNAs: an expanding universe

5 July 2018

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Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes

5 July 2018

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Riboswitches: ancient and promising genetic regulators

5 July 2018

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CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA

5 July 2018

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5 July 2018

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RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes

5 July 2018

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Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs

5 July 2018

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5 July 2018

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Small CRISPR RNAs guide antiviral defense in prokaryotes

5 July 2018

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Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs

5 July 2018

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The distributions, mechanisms, and structures of metabolite-binding riboswitches

5 July 2018

1 reference

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A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control

5 July 2018

1 reference

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Target identification of small noncoding RNAs in bacteria

5 July 2018

1 reference

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RNA maps reveal new RNA classes and a possible function for pervasive transcription

5 July 2018

1 reference

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Evolutionary conservation of sequence and secondary structures in CRISPR repeats

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3124441

A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain

5 July 2018

1 reference

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

5 July 2018

1 reference

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Insertion sequence diversity in archaea

5 July 2018

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Functional reconstitution and characterization of Pyrococcus furiosus RNase P

5 July 2018

1 reference

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A putative viral defence mechanism in archaeal cells

5 July 2018

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Structure of the S-adenosylmethionine riboswitch regulatory mRNA element

5 July 2018

1 reference

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The building blocks and motifs of RNA architecture

5 July 2018

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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

5 July 2018

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5 July 2018

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The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn

5 July 2018

1 reference

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5 July 2018

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Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements

5 July 2018

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The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus

5 July 2018

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Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

5 July 2018

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Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

5 July 2018

1 reference

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RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

5 July 2018

1 reference

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An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi

5 July 2018

1 reference

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Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

5 July 2018

1 reference

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Apollo: a sequence annotation editor

5 July 2018

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Noncoding RNA genes identified in AT-rich hyperthermophiles

5 July 2018

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Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.

5 July 2018

1 reference

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5 July 2018

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Noncoding RNA gene detection using comparative sequence analysis

5 July 2018

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Homologs of small nucleolar RNAs in Archaea

5 July 2018

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Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes

5 July 2018

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The structural basis for the oriented assembly of a TBP/TFB/promoter complex

5 July 2018

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Searching for patterns in genomic data

5 July 2018

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Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi: evidence for rolling-circle replication in a hyperthermophile

5 July 2018

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Multiple sequence alignment with hierarchical clustering

5 July 2018

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The IS10 antisense RNA blocks ribosome binding at the transposase translation initiation site

5 July 2018

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Evidence that a plasmid from a hyperthermophilic archaebacterium is relaxed at physiological temperatures

5 July 2018

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Small RNAs of the halophilic archaeon Haloferax volcanii

5 July 2018

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CRISPR elements in the Thermococcales: evidence for associated horizontal gene transfer in Pyrococcus furiosus.

21 January 2018

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Analysis of the first genome of a hyperthermophilic marine virus-like particle, PAV1, isolated from Pyrococcus abyssi

21 January 2018

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Tiny RNAs associated with transcription start sites in animals.

21 January 2018

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The Pyrococcus exosome complex: structural and functional characterization

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21668986

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-312

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21668986%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

4 February 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-312

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21668986%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

PubMed publication ID

21668986

1 reference