Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network (Q33932567)

30 July 2017

Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network (English)

1 reference

Nuclear hormone receptor family member nhr-86 CELE_Y40B10A.8

30 July 2017

Caenorhabditis elegans

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1 reference

GOA release 2020-03-11

8

Lynn Doucette-Stamm

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Colin C Conine

object named as

Colin C Conine

4

0 references

Stefan Taubert

object named as

Stefan Taubert

2

0 references

Keith Yamamoto

9

object named as

Keith R Yamamoto

1 reference

30 July 2017

10

Albertha J M Walhout

1 reference

30 July 2017

1

H Efsun Arda

1 reference

30 July 2017

Lesley T MacNeil

3

1 reference

30 July 2017

Ben Tsuda

5

1 reference

30 July 2017

Marc Van Gilst

6

1 reference

30 July 2017

Reynaldo Sequerra

7

1 reference

30 July 2017

1 May 2010

1 reference

Molecular Systems Biology

30 July 2017

1 reference

30 July 2017

6

1 reference

30 July 2017

367

1 reference

describes a project that uses

30 July 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2890327/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Gene-centered regulatory networks.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

The C. elegans Snail homolog CES-1 can activate gene expression in vivo and share targets with bHLH transcription factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

A census of human transcription factors: function, expression and evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

RNA Pol II accumulates at promoters of growth genes during developmental arrest.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Rictor/TORC2 regulates fat metabolism, feeding, growth, and life span in Caenorhabditis elegans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Nuclear receptor-like transcription factors in fungi

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

The Caenorhabditis elegans vulva: a post-embryonic gene regulatory network controlling organogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

glo-3, a novel Caenorhabditis elegans gene, is required for lysosome-related organelle biogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Genome-wide coactivation analysis of PGC-1alpha identifies BAF60a as a regulator of hepatic lipid metabolism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Serotonin regulates C. elegans fat and feeding through independent molecular mechanisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

The Mediator subunit MDT-15 confers metabolic adaptation to ingested material

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Caenorhabditis elegans nuclear receptors: insights into life traits

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

High-throughput in vivo analysis of gene expression in Caenorhabditis elegans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Matrix and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Network motifs: theory and experimental approaches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

A core transcriptional network for early mesoderm development in Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Function of the Caenorhabditis elegans ABC transporter PGP-2 in the biogenesis of a lysosome-related fat storage organelle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Genetic regulation of unsaturated fatty acid composition in C. elegans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

An ARC/Mediator subunit required for SREBP control of cholesterol and lipid homeostasis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Core transcriptional regulatory circuitry in human hepatocytes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Genome-wide analysis of protein-DNA interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

A Mediator subunit, MDT-15, integrates regulation of fatty acid metabolism by NHR-49-dependent and -independent pathways in C. elegans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

A Caenorhabditis elegans nutrient response system partially dependent on nuclear receptor NHR-49.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Metabolic control through the PGC-1 family of transcription coactivators

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

5 July 2018

Gene regulatory networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Nuclear hormone receptor NHR-49 controls fat consumption and fatty acid composition in C. elegans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

A first version of the Caenorhabditis elegans Promoterome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

A gateway-compatible yeast one-hybrid system.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Transcriptional regulatory code of a eukaryotic genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Structure and evolution of transcriptional regulatory networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Cytoscape: a software environment for integrated models of biomolecular interaction networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Network motifs: simple building blocks of complex networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Hierarchical organization of modularity in metabolic networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Making worm guts: the gene regulatory network of the Caenorhabditis elegans endoderm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

A genomic regulatory network for development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Nuclear receptors and lipid physiology: opening the X-files

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Comparison of complete nuclear receptor sets from the human, Caenorhabditis elegans and Drosophila genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

High-throughput yeast two-hybrid assays for large-scale protein interaction mapping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

daf-12 encodes a nuclear receptor that regulates the dauer diapause and developmental age in C. elegans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Protein interaction mapping in C. elegans using proteins involved in vulval development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Mutations in the hepatocyte nuclear factor-4alpha gene in maturity-onset diabetes of the young (MODY1)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

The genetics of Caenorhabditis elegans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

Efficient gene transfer in C.elegans: extrachromosomal maintenance and integration of transforming sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890327

The homeodomain protein PAL-1 specifies a lineage-specific regulatory network in the C. elegans embryo.

5 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.23

A gene-centered C. elegans protein-DNA interaction network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.23

A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.23

Identification of ligands for DAF-12 that govern dauer formation and reproduction in C. elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.23

Drosophila HNF4 regulates lipid mobilization and beta-oxidation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.23

C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.23

A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.23

Modular analysis of the transcriptional regulatory network of E. coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.23

GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.23

Gateway-compatible yeast one-hybrid screens

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2010.23

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/MSB.2010.23

1 reference

30 July 2017

1 reference

30 July 2017

1 reference