Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter (Q33935133)

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English	Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter	scientific article

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9 January 2020

Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter (English)

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9 January 2020

Escherichia coli

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9 January 2020

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Evgeny Zaychikov

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9 January 2020

Anastasia Rogozina

3

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9 January 2020

Ferdinand Walther

4

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9 January 2020

Malcolm Buckle

5

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9 January 2020

Hermann Heumann

6

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9 January 2020

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28 February 2005

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9 January 2020

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6

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Proceedings of the National Academy of Sciences of the United States of America

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9 January 2020

102

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9 January 2020

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9 January 2020

4706-4711

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9 January 2020

The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase

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28 July 2018

On the role of the Escherichia coli RNA polymerase sigma 70 region 4.2 and alpha-subunit C-terminal domains in promoter complex formation on the extended -10 galP1 promoter

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28 July 2018

An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4.

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28 July 2018

Bacterial RNA polymerases: the wholo story

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28 July 2018

Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates

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28 July 2018

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

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28 July 2018

Structure of the bacterial RNA polymerase promoter specificity sigma subunit

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28 July 2018

Function of the bacterial TATAAT -10 element as single-stranded DNA during RNA polymerase isomerization

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28 July 2018

Interaction of the C-terminal domain of the E. coli RNA polymerase alpha subunit with the UP element: recognizing the backbone structure in the minor groove surface

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28 July 2018

UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition

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28 July 2018

A structural model of transcription elongation

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28 July 2018

Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70.

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28 July 2018

Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase

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28 July 2018

Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit

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28 July 2018

The functional and regulatory roles of sigma factors in transcription

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28 July 2018

An inactive open complex mediated by an UP element at Escherichia coli promoters

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28 July 2018

Promoter recognition by Escherichia coli RNA polymerase: effects of the UP element on open complex formation and promoter clearance

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28 July 2018

The kinetics of sigma subunit directed promoter recognition by E. coli RNA polymerase

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28 July 2018

DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.

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28 July 2018

Stopped-flow kinetic analysis of the interaction of Escherichia coli RNA polymerase with the bacteriophage T7 A1 promoter

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28 July 2018

Promoter opening via a DNA fork junction binding activity

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28 July 2018

DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone

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28 July 2018

RNA polymerase-promoter interactions: the comings and goings of RNA polymerase

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28 July 2018

From Levinthal to pathways to funnels

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28 July 2018

Histidine-tagged RNA polymerase of Escherichia coli and transcription in solid phase.

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28 July 2018

Visualization of single molecules of RNA polymerase sliding along DNA.

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28 July 2018

Kinetic measurements of Escherichia coli RNA polymerase association with bacteriophage T7 early promoters

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28 July 2018

Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the λPR promoter

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28 July 2018

Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps

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28 July 2018

Promoters of Escherichia coli: a hierarchy of in vivo strength indicates alternate structures.

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28 July 2018

"Footprint" titrations yield valid thermodynamic isotherms

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Topography of intermediates in transcription initiation of E.coli

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Preparation and characterization of N-(1-pyrenyl)iodoacetamide-labeled Escherichia coli RNA polymerase.

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Flexibility of the DNA enhances promoter affinity of Escherichia coli RNA polymerase

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Structural organization of the RNA polymerase-promoter open complex

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Requirement for an upstream element for optimal transcription of a bacterial tRNA gene

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A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

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Sequence-independent upstream DNA-alphaCTD interactions strongly stimulate Escherichia coli RNA polymerase-lacUV5 promoter association

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Characterization of the closed complex intermediate formed during transcription initiation by Escherichia coli RNA polymerase

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Interaction of bacterial RNA-polymerase with two different promoters of phage T7 DNA. Conformational analysis.

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10.1073/PNAS.0408218102

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Europe PubMed Central

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9 January 2020

2005PNAS..102.4706S

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9 January 2020

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9 January 2020

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