Logic functions of the genomic cis-regulatory code (Q33935921)

30 July 2017

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title

Logic functions of the genomic cis-regulatory code (English)

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30 July 2017

Sorin Istrail

1

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PubMed ID

15788531

30 July 2017

Eric H Davidson

series ordinal

2

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PubMed ID

15788531

30 July 2017

language of work or name

English

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publication date

23 March 2005

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Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

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30 July 2017

102

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30 July 2017

14

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30 July 2017

4954-4959

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Gene regulatory network controlling embryonic specification in the sea urchin

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

A global control region defines a chromosomal regulatory landscape containing the HoxD cluster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Regulatory gene networks and the properties of the developmental process

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Looping and interaction between hypersensitive sites in the active beta-globin locus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Three habits of highly effective signaling pathways: principles of transcriptional control by developmental cell signaling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

A genomic regulatory network for development

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Insulators: many functions, many mechanisms.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Insulators and boundaries: versatile regulatory elements in the eukaryotic genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Repression by suppressor of hairless and activation by Notch are required to define a single row of single-minded expressing cells in the Drosophila embryo.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Groucho and dCtBP mediate separate pathways of transcriptional repression in the Drosophila embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

The hardwiring of development: organization and function of genomic regulatory systems.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Quantitative functional interrelations within the cis-regulatory system of the S. purpuratus Endo16 gene.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Modular cis-regulatory organization of developmentally expressed genes: two genes transcribed territorially in the sea urchin embryo, and additional examples.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Long-range repression in the Drosophila embryo

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Short-range transcriptional repressors mediate both quenching and direct repression within complex loci in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

A multimerizing transcription factor of sea urchin embryos capable of looping DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Quantitative model for gene regulation by lambda phage repressor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

Interaction of specific nuclear factors with the nuclease-hypersensitive region of the chicken adult beta-globin gene: nature of the binding domain.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

DNA looping and Sp1 multimer links: a mechanism for transcriptional synergism and enhancement

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

DNA looping between sites for transcriptional activation: self-association of DNA-bound Sp1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

An otx cis-regulatory module: a key node in the sea urchin endomesoderm gene regulatory network

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409624102

Fab-7 functions as a chromatin domain boundary to ensure proper segment specification by the Drosophila bithorax complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409624102

The Fab-7 element of the bithorax complex attenuates enhancer-promoter interactions in the Drosophila embryo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409624102

Transcription complex stability and chromatin dynamics in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409624102

Short-range repression permits multiple enhancers to function autonomously within a complex promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409624102

Modular cis-regulatory organization of Endo16, a gut-specific gene of the sea urchin embryo.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=555989

29 October 2018

Identifiers

DOI

10.1073/PNAS.0409624102

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

15788531