Discovery, characterization, and optimization of an unnatural base pair for expansion of the genetic alphabet (Q33943425)

30 July 2017

title

Discovery, characterization, and optimization of an unnatural base pair for expansion of the genetic alphabet (English)

1 reference

30 July 2017

Aaron M Leconte

1

1 reference

30 July 2017

Gil Tae Hwang

2

1 reference

30 July 2017

Shigeo Matsuda

3

1 reference

30 July 2017

Petr Capek

4

1 reference

30 July 2017

Yoshiyuki Hari

5

1 reference

30 July 2017

Floyd E Romesberg

6

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30 July 2017

language of work or name

English

0 references

publication date

25 January 2008

1 reference

Journal of the American Chemical Society

30 July 2017

published in

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30 July 2017

volume

130

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30 July 2017

issue

7

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30 July 2017

page(s)

2336-2343

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describes a project that uses

30 July 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2892755/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Selective and Stable DNA Base Pairing without Hydrogen Bonds

5 July 2018

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Minor Groove Interactions between Polymerase and DNA: More Essential to Replication than Watson−Crick Hydrogen Bonds?

5 July 2018

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Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs

5 July 2018

1 reference

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Enzymatic incorporation of a third nucleobase pair

5 July 2018

1 reference

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Minor groove hydrogen bonds and the replication of unnatural base pairs

5 July 2018

1 reference

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Optimization of unnatural base pair packing for polymerase recognition.

5 July 2018

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Substituent effects on the pairing and polymerase recognition of simple unnatural base pairs

5 July 2018

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5 July 2018

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5 July 2018

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Escherichia coli DNA polymerase I (Klenow fragment) uses a hydrogen-bonding fork from Arg668 to the primer terminus and incoming deoxynucleotide triphosphate to catalyze DNA replication.

5 July 2018

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Beyond A, C, G and T: augmenting nature's alphabet

5 July 2018

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Crystal structures of a ddATP-, ddTTP-, ddCTP, and ddGTP- trapped ternary complex of Klentaq1: insights into nucleotide incorporation and selectivity

5 July 2018

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Unnatural base pairs for specific transcription

5 July 2018

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5 July 2018

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

5 July 2018

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Crystal structure of a thermostable Bacillus DNA polymerase I large fragment at 2.1 A resolution

5 July 2018

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Structure of DNA polymerase I Klenow fragment bound to duplex DNA

5 July 2018

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Enzymatic recognition of the base pair between isocytidine and isoguanosine

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Efficient primer strand extension beyond oxadiazole carboxamide nucleobases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Optimization of interstrand hydrophobic packing interactions within unnatural DNA base pairs

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Efforts to expand the genetic alphabet: identification of a replicable unnatural DNA self-pair

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Nucleobase pairing in expanded Watson-Crick-like genetic information systems

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Facile polymerization of dNTPs bearing unnatural base analogues by DNA polymerase alpha and Klenow fragment (DNA polymerase I).

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Determinants of unnatural nucleobase stability and polymerase recognition

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

The effect of minor-groove hydrogen-bond acceptors and donors on the stability and replication of four unnatural base pairs

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Efforts toward expansion of the genetic alphabet: replication of DNA with three base pairs

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Identification of hydrogen bonds between Escherichia coli DNA polymerase I (Klenow fragment) and the minor groove of DNA by amino acid substitution of the polymerase and atomic substitution of the DNA.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Gel fidelity assay measuring nucleotide misinsertion, exonucleolytic proofreading, and lesion bypass efficiencies

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2892755

Polymerase recognition of unnatural base pairs

29 October 2018

1 reference

12 December 2020

Efforts towards expansion of the genetic alphabet: pyridone and methyl pyridone nucleobases

1 reference

12 December 2020

Stability and polymerase recognition of pyridine nucleobase analogues: role of minor-groove H-bond acceptors

1 reference

12 December 2020

A specific partner for abasic damage in DNA

1 reference

12 December 2020

Polymerase recognition and stability of fluoro-substituted pyridone nucleobase analogues

1 reference

12 December 2020

Identifiers

DOI

10.1021/JA078223D

1 reference

30 July 2017

1 reference

30 July 2017

1 reference