Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton (Q33946333)

30 July 2017

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton (English)

1 reference

30 July 2017

1 reference

7

Edward F DeLong

1 reference

30 July 2017

John P Ryan

5

0 references

Christopher A Scholin

6

object named as

Christopher A Scholin

1 reference

30 July 2017

Elizabeth A Ottesen

1

1 reference

30 July 2017

Roman Marin

2

1 reference

30 July 2017

Christina M Preston

3

1 reference

30 July 2017

Curtis R Young

4

1 reference

30 July 2017

30 June 2011

1 reference

30 July 2017

1 reference

30 July 2017

5

1 reference

30 July 2017

1881-1895

1 reference

30 July 2017

12

1 reference

https://scigraph.springernature.com/pub.10.1038/ismej.2011.70

30 July 2017

0 references

cites work

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Genomic and functional adaptation in surface ocean planktonic prokaryotes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Transcriptomic analysis of a marine bacterial community enriched with dimethylsulfoniopropionate

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Spatial patterns and light-driven variation of microbial population gene expression in surface waters of the oligotrophic open ocean

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Constitutive expression of the proteorhodopsin gene by a flavobacterium strain representative of the proteorhodopsin-producing microbial community in the North Sea.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Distinct flavobacterial communities in contrasting water masses of the north Atlantic Ocean

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Microbial community genomics in eastern Mediterranean Sea surface waters

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Assembling the marine metagenome, one cell at a time

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

New substrates for TonB-dependent transport: do we only see the 'tip of the iceberg'?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Design and testing of 'genome-proxy' microarrays to profile marine microbial communities

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Metagenomics of the deep Mediterranean, a warm bathypelagic habitat

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

KAAS: an automatic genome annotation and pathway reconstruction server

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Plant carbohydrate scavenging through tonB-dependent receptors: a feature shared by phytopathogenic and aquatic bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Community genomics among stratified microbial assemblages in the ocean's interior

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Relationship of temporal and spatial variabilities of ammonia-oxidizing bacteria to nitrification rates in Monterey Bay, California

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Environmental genome shotgun sequencing of the Sargasso Sea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Nutrient dynamics in the deep blue sea.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

A new vision of ocean biogeochemistry after a decade of the Joint Global Ocean Flux Study (JGOFS).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Unsuspected diversity among marine aerobic anoxygenic phototrophs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

KEGG: kyoto encyclopedia of genes and genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

The significance of digital gene expression profiles

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates

28 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Microbial community gene expression in ocean surface waters

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Systematic artifacts in metagenomes from complex microbial communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Light stimulates growth of proteorhodopsin-containing marine Flavobacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of 'Flectobacillus g

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

MEGAN analysis of metagenomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

A robotic molecular method for in situ detection of marine invertebrate larvae

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Building the Long-Term Picture: The U.S. JGOFS Time-Series Programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Genome characteristics of a generalist marine bacterial lineage

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

The ecology of Cytophaga-Flavobacteria in aquatic environments.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3223310

Contribution of Aerobic Photoheterotrophic Bacteria to the Carbon Cycle in the Ocean

29 October 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

Molecular detection of marine invertebrate larvae

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21716310

12 December 2020

inferred from PubMed ID database lookup

Evolution of characteristic quantities for dark matter halo density profiles

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

7 January 2021

inferred from DOI database lookup

Mobile autonomous process sampling within coastal ocean observing systems

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

7 January 2021

inferred from DOI database lookup

Interacting physical, chemical and biological forcing of phytoplankton thin-layer variability in Monterey Bay, California

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2011.70

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/ISMEJ.2011.70

1 reference

Dimensions Publication ID

30 July 2017

0 references

1 reference

30 July 2017

1 reference