Peptide binding prediction for the human class II MHC allele HLA-DP2: a molecular docking approach (Q33959944)

30 July 2017

Peptide binding prediction for the human class II MHC allele HLA-DP2: a molecular docking approach (English)

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30 July 2017

Irini Doytchinova

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author name string

Atanas Patronov

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1

1 reference

30 July 2017

Ivan Dimitrov

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2

1 reference

30 July 2017

Darren R Flower

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3

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30 July 2017

14 July 2011

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30 July 2017

BMC Structural Biology

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30 July 2017

11

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30 July 2017

32

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https://scigraph.springernature.com/pub.10.1186/1472-6807-11-32

30 July 2017

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cites work

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Peptide binding predictions for HLA DR, DP and DQ molecules

28 July 2018

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Crystal structure of HLA-DP2 and implications for chronic beryllium disease

28 July 2018

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Five HLA-DP molecules frequently expressed in the worldwide human population share a common HLA supertypic binding specificity

28 July 2018

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Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model

28 July 2018

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NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

28 July 2018

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AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

28 July 2018

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Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research

28 July 2018

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A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

28 July 2018

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Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research

28 July 2018

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SVRMHC prediction server for MHC-binding peptides

28 July 2018

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A community resource benchmarking predictions of peptide binding to MHC-I molecules

28 July 2018

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Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models

28 July 2018

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MHC class II proteins and disease: a structural perspective

28 July 2018

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Announcing the worldwide Protein Data Bank

28 July 2018

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28 July 2018

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HLA-DP2: self peptide sequences and binding properties

28 July 2018

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X-ray crystal structure of HLA-DR4 (DRA*0101, DRB1*0401) complexed with a peptide from human collagen II

28 July 2018

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Crystallographic analysis of endogenous peptides associated with HLA-DR1 suggests a common, polyproline II-like conformation for bound peptides

28 July 2018

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Crystal structure of the human class II MHC protein HLA-DR1 complexed with an influenza virus peptide

28 July 2018

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HLA-DPB1 glutamate 69: a genetic marker of beryllium disease

28 July 2018

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A specific HLA-DP beta allele is associated with pauciarticular juvenile rheumatoid arthritis but not adult rheumatoid arthritis

28 July 2018

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Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models.

28 July 2018

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The HLA-A2-supermotif: a QSAR definition.

21 January 2018

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In SilicoTools for Predicting Peptides Binding to HLA-Class II Molecules: More Confusion than Conclusion

21 January 2018

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MultiRTA: a simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes

21 January 2018

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pDOCK: a new technique for rapid and accurate docking of peptide ligands to Major Histocompatibility Complexes

21 January 2018

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https://api.crossref.org/works/10.1186%2F1472-6807-11-32

Characterization of natural peptide ligands from HLA-DP2: new insights into HLA-DP peptide-binding motifs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-11-32

Attractive interactions between side chains of histidine-histidine and histidine-arginine-based cationic dipeptides in water

21 January 2018

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https://api.crossref.org/works/10.1186%2F1472-6807-11-32

Detailed analysis of the effects of Glu/Lys beta69 human leukocyte antigen-DP polymorphism on peptide-binding specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1472-6807-11-32

21 January 2018

The IMGT/HLA database

1 reference

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The immune epitope database 2.0.

29 October 2018

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Role of high-affinity HLA-DP specific CLIP-derived peptides in beryllium binding to the HLA-DPGlu69 berylliosis-associated molecules and presentation to beryllium-sensitized T cells.

29 October 2018

1 reference

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Optimally-connected hidden markov models for predicting MHC-binding peptides.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146810

Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146810

Towards the chemometric dissection of peptide--HLA-A*0201 binding affinity: comparison of local and global QSAR models.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146810

Molecular basis of peptide recognition by the TCR: affinity differences calculated using large scale computing.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146810

Large-scale molecular dynamics simulations of HLA-A*0201 complexed with a tumor-specific antigenic peptide: can the alpha3 and beta2m domains be neglected?

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3146810

HLA-A and DPB1 loci confer susceptibility to Graves' disease

29 October 2018

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12 December 2020

Toward an atomistic understanding of the immune synapse: large-scale molecular dynamics simulation of a membrane-embedded TCR-pMHC-CD4 complex

1 reference

12 December 2020

MHC Class II Binding Prediction by Molecular Docking

1 reference

12 December 2020

The role of HLA-DPB1 disparity in the development of acute graft-versus-host disease following unrelated donor marrow transplantation

1 reference

12 December 2020

HLA-DPB polymorphisms: Glu 69 association with sarcoidosis

1 reference

12 December 2020

Susceptibility to hard metal lung disease is strongly associated with the presence of glutamate 69 in HLA-DPβ chain

1 reference

12 December 2020

Identifiers

DOI

10.1186/1472-6807-11-32

1 reference

Dimensions Publication ID

30 July 2017

0 references

1 reference

30 July 2017

1 reference