Did evolution leap to create the protein universe? (Q33960336)

30 July 2017

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title

Did evolution leap to create the protein universe? (English)

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30 July 2017

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1

Burkhard Rost

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30 July 2017

publication date

1 June 2002

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Current Opinion in Structural Biology

30 July 2017

published in

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30 July 2017

volume

12

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30 July 2017

issue

3

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30 July 2017

page(s)

409-416

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Evolutionary predictions of binding surfaces and interactions.

30 July 2017

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From genome to function

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Estimating the number of protein folds and families from complete genome data

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7 January 2021

Target space for structural genomics revisited

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A structural census of the current population of protein sequences

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ProtoMap: automatic classification of protein sequences and hierarchy of protein families

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Methodologies for target selection in structural genomics.

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Variations on probabilistic suffix trees: statistical modeling and prediction of protein families

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7 January 2021

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Clustering and analysis of protein families

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SCOP database in 2002: refinements accommodate structural genomics

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A rapid classification protocol for the CATH Domain Database to support structural genomics

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Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels

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Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model

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7 January 2021

An Olfactory Sensory Map in the Fly Brain

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7 January 2021

beta-Barrel membrane proteins

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7 January 2021

Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network-based predictor

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7 January 2021

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7 January 2021

Continuum secondary structure captures protein flexibility

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7 January 2021

A protein taxonomy based on secondary structure

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Review: protein secondary structure prediction continues to rise.

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Intrinsically disordered protein

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A conserved helix-unfolding motif in the naturally unfolded proteins

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Roles of partly unfolded conformations in macromolecular self-assembly

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7 January 2021

Loopy proteins appear conserved in evolution.

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7 January 2021

Sequence complexity of disordered protein

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7 January 2021

Practical limits of function prediction

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7 January 2021

Intrinsic errors in genome annotation

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7 January 2021

Structural genomics takes off.

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7 January 2021

Finding function through structural genomics

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7 January 2021

Selecting protein targets for structural genomics of Pyrobaculum aerophilum: validating automated fold assignment methods by using binary hypothesis testing

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7 January 2021

iProClass: an integrated, comprehensive and annotated protein classification database

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7 January 2021

Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins.

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7 January 2021

Picasso: generating a covering set of protein family profiles

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7 January 2021

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

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7 January 2021

GeneRAGE: a robust algorithm for sequence clustering and domain detection.

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7 January 2021

Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

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7 January 2021

Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.

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7 January 2021

Scale-free behavior in protein domain networks.

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7 January 2021

Generating protein interaction maps from incomplete data: application to fold assignment

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7 January 2021

Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast

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7 January 2021

Scale-free networks in biology: new insights into the fundamentals of evolution?

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7 January 2021

Domain combinations in archaeal, eubacterial and eukaryotic proteomes

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7 January 2021

An insight into domain combinations

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7 January 2021

Modularity and homology: modelling of the titin type I modules and their interfaces

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7 January 2021

The geometry of domain combination in proteins

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7 January 2021

The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli

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Small-molecule metabolism: an enzyme mosaic

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7 January 2021

Functional versatility and molecular diversity of the metabolic map of Escherichia coli.

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7 January 2021

Genomic-scale comparison of sequence- and structure-based methods of function prediction: does structure provide additional insight?

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7 January 2021

Protein structural alignments and functional genomics

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7 January 2021

HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.

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7 January 2021

Predicting novel protein folds by using FRAGFOLD.

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7 January 2021

Use of structure comparison methods for the refinement of protein structure predictions. I. Identifying the structural family of a protein from low-resolution models.

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7 January 2021

On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?

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7 January 2021

From complete genomes to measures of substitution rate variability within and between proteins

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7 January 2021

Protein repeats: structures, functions, and evolution

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7 January 2021

Review: prediction of in vivo fates of proteins in the era of genomics and proteomics

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7 January 2021

Distinct stages of protein evolution as suggested by protein sequence analysis

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7 January 2021

EVA: continuous automatic evaluation of protein structure prediction servers.

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7 January 2021

10.1016/S0959-440X(02)00337-8

Identifiers

DOI

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30 July 2017

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