EuroPineDB: a high-coverage web database for maritime pine transcriptome (Q33962512)

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7 February 2020

title

EuroPineDB: a high-coverage web database for maritime pine transcriptome (English)

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7 February 2020

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1

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7 February 2020

Javier Canales

2

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7 February 2020

Rocío Bautista

6

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7 February 2020

Pedro Perdiguero

9

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7 February 2020

Carmen Collada

10

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7 February 2020

M. Teresa Cervera

11

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7 February 2020

Ricardo Ordás

13

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7 February 2020

Concepción Avila

15

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7 February 2020

Francisco M Canovas

16

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7 February 2020

Manuel Gonzalo Claros

17

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7 February 2020

author name string

Darío Guerrero-Fernández

3

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7 February 2020

David P Villalobos

4

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7 February 2020

Sara M Díaz-Moreno

5

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7 February 2020

Arantxa Flores-Monterroso

7

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7 February 2020

M Ángeles Guevara

8

1 reference

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7 February 2020

Alvaro Soto

12

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7 February 2020

Francisco R Cantón

14

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7 February 2020

language of work or name

English

0 references

publication date

15 July 2011

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7 February 2020

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7 February 2020

volume

12

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7 February 2020

page(s)

366

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AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences

7 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

28 July 2018

1 reference

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Identification of genes regulated by ammonium availability in the roots of maritime pine trees

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

BLAST+: architecture and applications

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

PineSAP--sequence alignment and SNP identification pipeline

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

A new genomic resource dedicated to wood formation in Eucalyptus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Processing the loblolly pine PtGen2 cDNA microarray

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Identifying protein-coding genes in genomic sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

RNA-Seq: a revolutionary tool for transcriptomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

CleanEST: a database of cleansed EST libraries

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

TreeGenes: A forest tree genome database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

High-throughput functional annotation and data mining with the Blast2GO suite

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Identification of genes differentially expressed during adventitious shoot induction in Pinus pinea cotyledons by subtractive hybridization and quantitative PCR.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

ForestTreeDB: a database dedicated to the mining of tree transcriptomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

The proteome of maritime pine wood forming tissue

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Microarray analyses of gene expression during adventitious root development in Pinus contorta

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

mreps: Efficient and flexible detection of tandem repeats in DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

STACK: Sequence Tag Alignment and Consensus Knowledgebase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

CAP3: A DNA sequence assembly program

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Analysis of xylem formation in pine by cDNA sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3152544

Plasticity of maritime pine (Pinus pinaster) wood-forming tissues during a growing season.

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-366

Suppression subtractive hybridisation: application in the discovery of novel pharmacological targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-366

An optimized protocol for analysis of EST sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-366

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-366

MELOGEN: an EST database for melon functional genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-366

Next-generation DNA sequencing methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-366

Distinguishing protein-coding and noncoding genes in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-366

21 January 2018

Identifiers

DOI

10.1186/1471-2164-12-366

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21762488%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

7 February 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-366

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21762488%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

PubMed publication ID

21762488

1 reference