The Anolis lizard genome: an amniote genome without isochores (Q33973441)

30 July 2017

title

The Anolis lizard genome: an amniote genome without isochores (English)

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30 July 2017

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30 July 2017

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30 July 2017

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Matthew K Fujita

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30 July 2017

publication date

27 July 2011

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Genome Biology and Evolution

30 July 2017

published in

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30 July 2017

volume

3

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30 July 2017

page(s)

974-984

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Creative Commons Attribution-NonCommercial 3.0 Unported

30 July 2017

copyright license

start time

3 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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Can GC content at third-codon positions be used as a proxy for isochore composition?

5 July 2018

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The evolution of isochore patterns in vertebrate genomes

5 July 2018

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5 July 2018

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Replication timing, chromosomal bands, and isochores

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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A new perspective on isochore evolution.

5 July 2018

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5 July 2018

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An isochore map of human chromosomes

5 July 2018

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Out of Cuba: overwater dispersal and speciation among lizards in the Anolis carolinensis subgroup

5 July 2018

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GC composition of the human genome: in search of isochores

5 July 2018

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5 July 2018

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The decline of isochores in mammals: an assessment of the GC content variation along the mammalian phylogeny

5 July 2018

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Isochores merit the prefix 'iso'

5 July 2018

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Recombination explains isochores in mammalian genomes

5 July 2018

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Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

5 July 2018

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Vanishing GC-rich isochores in mammalian genomes.

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Base compositions of genes encoding alpha-actin and lactate dehydrogenase-A from differently adapted vertebrates show no temperature-adaptive variation in G + C content

5 July 2018

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Expression patterns and gene distribution in the human genome

5 July 2018

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Analysis of the phylogenetic distribution of isochores in vertebrates and a test of the thermal stability hypothesis

5 July 2018

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Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution

5 July 2018

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Misunderstandings about isochores. Part 1

5 July 2018

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The evolution of isochores

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Initial sequencing and analysis of the human genome

5 July 2018

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The correlation between intron length and recombination in drosophila. Dynamic equilibrium between mutational and selective forces.

5 July 2018

1 reference

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Isochores and the evolutionary genomics of vertebrates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Warm-blooded isochore structure in Nile crocodile and turtle

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Evidence of selection on silent site base composition in mammals: potential implications for the evolution of isochores and junk DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

A codon-based model of nucleotide substitution for protein-coding DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

The major components of the mouse and human genomes. 1. Preparation, basic properties and compositional heterogeneity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Compositional constraints and genome evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

The distribution of genes in the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Evidence for biased gene conversion in concerted evolution of ribosomal DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Turtle isochore structure is intermediate between amphibians and other amniotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Recombination drives the evolution of GC-content in the human genome.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Compositional patterns in reptilian genomes

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: disease-related genes in timing-switch regions

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

The relationship between synaptonemal complex length and genome size in four vertebrate classes (Osteicthyes, Reptilia, Aves, Mammalia).

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

Patterns of Vertebrate Isochore Evolution Revealed by Comparison of Expressed Mammalian, Avian, and Crocodilian Genes

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3184785

GC3 of Genes Can Be Used as a Proxy for Isochore Base Composition: A Reply to Elhaik et al

29 October 2018

1 reference

12 December 2020

The effect of linkage on limits to artificial selection

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12 December 2020

Local Rates of Recombination Are Positively Correlated with GC Content in the Human Genome

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12 December 2020

A specific mismatch repair event protects mammalian cells from loss of 5-methylcytosine

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12 December 2020

Identifiers

DOI

10.1093/GBE/EVR072

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30 July 2017

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30 July 2017

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