Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing (Q33980626)

30 July 2017

title

Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing (English)

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30 July 2017

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Daniel Gonzalez-Ibeas

1

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30 July 2017

José Blanca

2

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30 July 2017

Livia Donaire

3

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30 July 2017

Montserrat Saladié

4

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30 July 2017

Albert Mascarell-Creus

5

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30 July 2017

Ana Cano-Delgado

6

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30 July 2017

Jordi Garcia-Mas

7

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30 July 2017

Cesar Llave

8

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30 July 2017

Miguel A Aranda

9

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30 July 2017

language of work or name

English

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publication date

3 August 2011

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30 July 2017

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30 July 2017

volume

12

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30 July 2017

page(s)

393

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Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon.

30 July 2017

cites work

1 reference

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Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy.

5 July 2018

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Virus-derived small interfering RNAs at the core of plant–virus interactions

5 July 2018

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Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation.

5 July 2018

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Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata).

5 July 2018

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Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis

5 July 2018

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An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.).

5 July 2018

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Computational challenges in miRNA target predictions: to be or not to be a true target?

5 July 2018

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5 July 2018

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Heterochromatic siRNAs and DDM1 independently silence aberrant 5S rDNA transcripts in Arabidopsis

5 July 2018

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Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress

5 July 2018

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tRNAdb 2009: compilation of tRNA sequences and tRNA genes

5 July 2018

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Rfam: updates to the RNA families database

5 July 2018

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Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

5 July 2018

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Conifers have a unique small RNA silencing signature

5 July 2018

1 reference

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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

5 July 2018

1 reference

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Inferring microRNA activities by combining gene expression with microRNA target prediction

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

miRBase: tools for microRNA genomics

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

MELOGEN: an EST database for melon functional genomics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Infection and coaccumulation of tobacco mosaic virus proteins alter microRNA levels, correlating with symptom and plant development

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Cloning and characterization of microRNAs from wheat (Triticum aestivum L.).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Genome-wide profiling and analysis of Arabidopsis siRNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

A two-hit trigger for siRNA biogenesis in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

An eIF4E allele confers resistance to an uncapped and non-polyadenylated RNA virus in melon

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Identification of small non-coding RNAs from mitochondria and chloroplasts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

MicroRNAS and their regulatory roles in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Post-transcriptional small RNA pathways in plants: mechanisms and regulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

The diversity of RNA silencing pathways in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

5 July 2018

1 reference

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Elucidation of the small RNA component of the transcriptome

5 July 2018

1 reference

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Genome sequencing in microfabricated high-density picolitre reactors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

microRNA-directed phasing during trans-acting siRNA biogenesis in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

ASRP: the Arabidopsis Small RNA Project Database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Defective interfering RNA hinders the activity of a tombusvirus-encoded posttranscriptional gene silencing suppressor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Molecular characterization of a Melon necrotic spot virus strain that overcomes the resistance in melon and nonhost plants.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Genetic and functional diversification of small RNA pathways in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

MicroRNA targets in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Mfold web server for nucleic acid folding and hybridization prediction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

A uniform system for microRNA annotation

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

5 July 2018

Plant snoRNA database

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A viral suppressor of RNA silencing differentially regulates the accumulation of short interfering RNAs and micro-RNAs in tobacco

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Prediction of plant microRNA targets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Sequence and analysis of the tomato JOINTLESS locus

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Foldback transposable elements in plants

5 July 2018

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Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163571

Sources of resistance to viruses in the Potyviridae

5 July 2018

1 reference

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Emerging pathogens: the epidemiology and evolution of species jumps

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-393

Inheritance of Resistance to Watermelon mosaic virus in Cucumis melo that Impairs Virus Accumulation, Symptom Expression, and Aphid Transmission.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-393

Mechanism of plant eIF4E-mediated resistance against a Carmovirus (Tombusviridae): cap-independent translation of a viral RNA controlled in cis by an (a)virulence determinant

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-393

Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-393

Criteria for annotation of plant MicroRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-393

The complex interplay between plant viruses and host RNA-silencing pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-393

Temporal sequence of cell wall disassembly in rapidly ripening melon fruit

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21812964

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evidence that miRNAs are different from other RNAs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21812964

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-393

1 reference

Dimensions Publication ID

30 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-393

9 September 2019

1 reference

30 July 2017

1 reference