Within-species lateral genetic transfer and the evolution of transcriptional regulation in Escherichia coli and Shigella. (Q34060765)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22035052%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

title

Within-species lateral genetic transfer and the evolution of transcriptional regulation in Escherichia coli and Shigella (English)

1 reference

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15 January 2020

1 reference

2

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15 January 2020

author name string

Elizabeth Skippington

series ordinal

1

1 reference

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15 January 2020

language of work or name

English

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publication date

29 October 2011

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15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22035052%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

volume

12

1 reference

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15 January 2020

page(s)

532

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22035052%20AND%20SRC:MED&resulttype=core&format=json

Lateral transfer of genes and gene fragments in Staphylococcus extends beyond mobile elements

15 January 2020

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Lateral genetic transfer and the construction of genetic exchange communities

5 July 2018

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RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

5 July 2018

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progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

5 July 2018

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Lateral transfer of genes and gene fragments in prokaryotes

5 July 2018

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Lateral genetic transfer: open issues

5 July 2018

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Are protein domains modules of lateral genetic transfer?

5 July 2018

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5 July 2018

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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

5 July 2018

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Regulation by transcription factors in bacteria: beyond description

5 July 2018

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The gene regulatory logic of transcription factor evolution

5 July 2018

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The impact of horizontal gene transfer in shaping operons and protein interaction networks--direct evidence of preferential attachment

5 July 2018

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Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli

5 July 2018

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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

5 July 2018

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Complexity, connectivity, and duplicability as barriers to lateral gene transfer

5 July 2018

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Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA.

5 July 2018

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Getting connected: analysis and principles of biological networks

5 July 2018

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The evolutionary significance of cis-regulatory mutations

5 July 2018

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Robustness and evolvability in genetic regulatory networks

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

5 July 2018

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Bacterial regulatory networks are extremely flexible in evolution

5 July 2018

1 reference

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A simple and robust statistical test for detecting the presence of recombination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Phylogenetic identification of lateral genetic transfer events

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Scale-free networks in cell biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Highways of gene sharing in prokaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Evolutionary origins of genomic repertoires in bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

ProbCons: Probabilistic consistency-based multiple sequence alignment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Mauve: multiple alignment of conserved genomic sequence with rearrangements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Structure and evolution of transcriptional regulatory networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Identifying global regulators in transcriptional regulatory networks in bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Bayesian inference of phylogeny and its impact on evolutionary biology

5 July 2018

1 reference

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MRBAYES: Bayesian inference of phylogenetic trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Lateral gene transfer and the nature of bacterial innovation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Phylogenetic classification and the universal tree

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Horizontal gene transfer among genomes: the complexity hypothesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Shigella and enteroinvasive Escherichia coli strains are derived from distinct ancestral strains of E. coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Genomic evidence for two functionally distinct gene classes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Selfish operons: horizontal transfer may drive the evolution of gene clusters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Enzyme polymorphism and genetic population structure in Escherichia coli and Shigella

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Bacterial regulation: global regulatory networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Analyzing the mosaic structure of genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212841

Integration of horizontally transferred genes into regulatory interaction networks takes many million years

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-532

The Evolutionary History of Shigella and Enteroinvasive Escherichia coli Revised

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-532

Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-532

Dual multiple change-point model leads to more accurate recombination detection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-532

Phylogenetic inference based on matrix representation of trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-532

21 January 2018

Identifiers

DOI

10.1186/1471-2164-12-532

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22035052%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22035052%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

PubMed publication ID

22035052

1 reference