PhosTryp: a phosphorylation site predictor specific for parasitic protozoa of the family trypanosomatidae (Q34105957)

31 July 2017

title

PhosTryp: a phosphorylation site predictor specific for parasitic protozoa of the family trypanosomatidae (English)

1 reference

31 July 2017

1 reference

0 references

trypanosomatidae

1 reference

based on heuristic

inferred from title

author

Manuela Helmer-Citterich

7

object named as

Manuela Helmer-Citterich

1 reference

31 July 2017

4

Gabriele Ausiello

1 reference

31 July 2017

Pier Federico Gherardini

2

object named as

Pier Federico Gherardini

1 reference

31 July 2017

1

Antonio Palmeri

1 reference

31 July 2017

Polina Tsigankov

3

1 reference

31 July 2017

Gerald F Späth

5

1 reference

31 July 2017

Dan Zilberstein

6

1 reference

31 July 2017

language of work or name

English

0 references

publication date

19 December 2011

1 reference

31 July 2017

1 reference

31 July 2017

volume

12

1 reference

31 July 2017

page(s)

614

1 reference

From sequence to structural analysis in protein phosphorylation motifs

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Phospho.ELM: a database of phosphorylation sites--update 2011

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Musite, a tool for global prediction of general and kinase-specific phosphorylation sites.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Phosphoproteome dynamics reveal heat-shock protein complexes specific to the Leishmania donovani infectious stage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Phosphoproteomic analysis of the human pathogen Trypanosoma cruzi at the epimastigote stage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

The chemical biology of protein phosphorylation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

The phosphoproteome of bloodstream form Trypanosoma brucei, causative agent of African sleeping sickness

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Predicting protein post-translational modifications using meta-analysis of proteome scale data sets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Linear Motif Atlas for Phosphorylation-Dependent Signaling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Advances in the analysis of protein phosphorylation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Comparative genomic analysis of three Leishmania species that cause diverse human disease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Comparative analysis of the kinomes of three pathogenic trypanosomatids: Leishmania major, Trypanosoma brucei and Trypanosoma cruzi

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Differentiation of Leishmania donovani in host-free system: analysis of signal perception and response.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Phosphoproteomics by mass spectrometry and classical protein chemistry approaches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

The importance of intrinsic disorder for protein phosphorylation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Protein disorder prediction: implications for structural proteomics

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

5 July 2018

https://api.crossref.org/works/10.1186%2F1471-2164-12-614

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

The PSIPRED protein structure prediction server

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Signaling--2000 and beyond

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Sequence and structure-based prediction of eukaryotic protein phosphorylation sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

Identification of Leishmania-specific protein phosphorylation sites by LC-ESI-MS/MS and comparative genomics analyses

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-614

Phosphoproteomic analysis of Leishmania donovani pro- and amastigote stages.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-614

Post-translational modification of cellular proteins during Leishmania donovani differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-614

Prediction of phosphorylation sites using SVMs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-614

NetPhosBac - a predictor for Ser/Thr phosphorylation sites in bacterial proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-614

NetPhosYeast: prediction of protein phosphorylation sites in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-614

Multiple levels of gene regulation mediate differentiation of the intracellular pathogen Leishmania.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-614

A support vector machine approach to the identification of phosphorylation sites

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3285042

28 October 2018

Identifiers

DOI

10.1186/1471-2164-12-614

1 reference

31 July 2017

1 reference

31 July 2017

1 reference