Evidence for widespread reticulate evolution within human duplicons (Q34106726)

31 July 2017

title

Evidence for widespread reticulate evolution within human duplicons (English)

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31 July 2017

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5

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31 July 2017

6

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31 July 2017

Jane Loveland

3

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Luigi Viggiano

object named as

Luigi Viggiano

7

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Michael S Jackson

object named as

Michael S Jackson

1

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Mauro Santibanez-Korev

10

object named as

Mauro Santibanez-Koref

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31 July 2017

Karen Oliver

2

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31 July 2017

Sean Humphray

4

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31 July 2017

Jonathan P Park

8

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31 July 2017

Matthew E Hurles

9

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31 July 2017

language of work or name

English

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publication date

30 September 2005

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American Journal of Human Genetics

31 July 2017

published in

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31 July 2017

volume

77

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31 July 2017

issue

5

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31 July 2017

page(s)

824-840

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Gene conversion and deletion frequencies during double-strand break repair in human cells are controlled by the distance between direct repeats

31 July 2017

cites work

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Complex genomic rearrangements lead to novel primate gene function

5 July 2018

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Gene conversion and evolution of Xq28 duplicons involved in recurring inversions causing severe hemophilia A

5 July 2018

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Genetic recombination of human immunodeficiency virus type 1 in one round of viral replication: effects of genetic distance, target cells, accessory genes, and lack of high negative interference in crossover events

5 July 2018

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The sequence and analysis of duplication-rich human chromosome 16

5 July 2018

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Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence

5 July 2018

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CpG mutation rates in the human genome are highly dependent on local GC content

5 July 2018

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Serial segmental duplications during primate evolution result in complex human genome architecture

5 July 2018

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Finishing the euchromatic sequence of the human genome

5 July 2018

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The DNA sequence and comparative analysis of human chromosome 5

5 July 2018

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Origins of chromosomal rearrangement hotspots in the human genome: evidence from the AZFa deletion hotspots

5 July 2018

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Detection of large-scale variation in the human genome

5 July 2018

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Large-scale copy number polymorphism in the human genome

5 July 2018

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Signatures of selection and gene conversion associated with human color vision variation

5 July 2018

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DNA sequence and analysis of human chromosome 9

5 July 2018

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Dynamics of a human interparalog gene conversion hotspot

5 July 2018

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Meiotic recombination hot spots and human DNA diversity.

5 July 2018

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Implications of human genome architecture for rearrangement-based disorders: the genomic basis of disease

5 July 2018

1 reference

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Aberrant interchromosomal exchanges are the predominant cause of the 22q11.2 deletion

5 July 2018

1 reference

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Neocentromeres in 15q24-26 map to duplicons which flanked an ancestral centromere in 15q25.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Abundant gene conversion between arms of palindromes in human and ape Y chromosomes.

5 July 2018

1 reference

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The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

5 July 2018

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Complex Evolution of 7E Olfactory Receptor Genes in Segmental Duplications

5 July 2018

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Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Segmental duplications in euchromatic regions of human chromosome 5: a source of evolutionary instability and transcriptional innovation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Recent segmental duplications in the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

The chAB4 and NF1-related long-range multisequence DNA families are contiguous in the centromeric heterochromatin of several human chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Molecular-evolutionary mechanisms for genomic disorders

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Gene conversion homogenizes the CMT1A paralogous repeats

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Human paralogs of KIAA0187 were created through independent pericentromeric-directed and chromosome-specific duplication mechanisms

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Positive selection of a gene family during the emergence of humans and African apes

5 July 2018

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Evolutionarily conserved low copy repeats (LCRs) in 22q11 mediate deletions, duplications, translocations, and genomic instability: an update and literature review

5 July 2018

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Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees

5 July 2018

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Molecular mechanisms for constitutional chromosomal rearrangements in humans

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Comparative mapping of the region of human chromosome 7 deleted in williams syndrome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Conservation of pericentromeric duplications of a 200-kb part of the human 21q22.1 region in primates.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Duplication of a gene-rich cluster between 16p11.1 and Xq28: a novel pericentromeric-directed mechanism for paralogous genome evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Molecular drive: a cohesive mode of species evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Male-driven biased gene conversion governs the evolution of base composition in human alu repeats.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

BAGE genes generated by juxtacentromeric reshuffling in the Hominidae lineage are under selective pressure

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Detecting recombination in 4-taxa DNA sequence alignments with Bayesian hidden Markov models and Markov chain Monte Carlo.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

A simulation study of the reliability of recombination detection methods.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Identification of a complex env subtype E HIV type 1 virus from the democratic republic of congo, recombinant with A, G, H, J, K, and unknown subtypes

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Unequal exchange at the Charcot-Marie-Tooth disease type 1A recombination hot-spot is not elevated above the genome average rate

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

TOPAL 2.0: improved detection of mosaic sequences within multiple alignments.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

Detecting and characterizing gene conversions between multigene family members.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

SWAN: sliding window analysis of nucleotide sequence variability.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

The partition matrix: exploring variable phylogenetic signals along nucleotide sequence alignments

28 October 2018

1 reference

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Clonal divergence in Escherichia coli as a result of recombination, not mutation

28 October 2018

1 reference

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Statistical tests for detecting gene conversion.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1271390

The structure and evolution of centromeric transition regions within the human genome

28 October 2018

1 reference

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Detecting recombination from gene trees

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12 December 2020

Genomic inversions of human chromosome 15q11-q13 in mothers of Angelman syndrome patients with class II (BP2/3) deletions

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Characterization of a De Novo Conversion in Human Complement C4 Gene Producing a C4B5-Like Protein

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Patterns of reticulate evolution for the classical class I and II HLA loci

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Identifiers

DOI

10.1086/497704

1 reference

31 July 2017

1 reference

31 July 2017

1 reference