What Is a Microsatellite: A Computational and Experimental Definition Based upon Repeat Mutational Behavior at A/T and GT/AC Repeats (Q34131685)

31 July 2017

title

What is a microsatellite: a computational and experimental definition based upon repeat mutational behavior at A/T and GT/AC repeats (English)

1 reference

https://api.crossref.org/works/10.1093/GBE/EVQ046

31 July 2017

What Is a Microsatellite: A Computational and Experimental Definition Based upon Repeat Mutational Behavior at A/T and GT/AC Repeats (English)

1 reference

12 June 2024

1 reference

Francesca Chiaromonte

4

object named as

Francesca Chiaromonte

1 reference

31 July 2017

5

Kristin A Eckert

1 reference

31 July 2017

1

Yogeshwar D. Kelkar

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20668018

12 June 2024

author name string

Noelle Strubczewski

2

1 reference

31 July 2017

Suzanne E. Hile

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20668018

12 June 2024

Kateryna D. Makova

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20668018

12 June 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20668018

12 June 2024

publication date

28 July 2010

1 reference

full work available at URL

31 July 2017

https://academic.oup.com/gbe/article-pdf/doi/10.1093/gbe/evq046/17483321/evq046.pdf

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20668018

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20668018/pdf/?tool=EBI

12 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20668018

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20668018/?tool=EBI

12 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20668018

https://europepmc.org/articles/PMC2940325

12 June 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20668018

https://europepmc.org/articles/PMC2940325?pdf=render

12 June 2024

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20668018

http://academic.oup.com/gbe/article-pdf/doi/10.1093/gbe/evq046/17483321/evq046.pdf

12 June 2024

https://api.crossref.org/works/10.1093/GBE/EVQ046

1 reference

Genome Biology and Evolution

12 June 2024

published in

1 reference

31 July 2017

volume

2

1 reference

31 July 2017

page(s)

620-635

1 reference

The UCSC Genome Browser database: update 2010

31 July 2017

cites work

1 reference

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5 July 2018

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Human postmeiotic segregation 2 exhibits biased repair at tetranucleotide microsatellite sequences

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Conservation of noncoding microsatellites in plants: implication for gene regulation

5 July 2018

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5 July 2018

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The rise, fall and renaissance of microsatellites in eukaryotic genomes

5 July 2018

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Mechanism of a genetic glissando: structural biology of indel mutations.

5 July 2018

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5 July 2018

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Repeat instability: mechanisms of dynamic mutations

5 July 2018

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Microsatellite instability generates diversity in brain and sociobehavioral traits

5 July 2018

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Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing

5 July 2018

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Microsatellite instability regulates transcription factor binding and gene expression

5 July 2018

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Some microsatellites may act as novel polymorphic cis-regulatory elements through transcription factor binding

5 July 2018

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Survey and analysis of microsatellites in the silkworm, Bombyx mori: frequency, distribution, mutations, marker potential and their conservation in heterologous species

5 July 2018

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Microsatellites: simple sequences with complex evolution

5 July 2018

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Microsatellites within genes: structure, function, and evolution

5 July 2018

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5 July 2018

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Deletion in a (T)8 microsatellite abrogates expression regulation by 3'-UTR.

5 July 2018

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Two Distinct Modes of Microsatellite Mutation Processes: Evidence From the Complete Genomic Sequences of Nine Species

5 July 2018

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5 July 2018

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Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review

5 July 2018

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Base composition of mononucleotide runs affects DNA polymerase slippage and removal of frameshift intermediates by mismatch repair in Saccharomyces cerevisiae

5 July 2018

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Abundant raw material for cis-regulatory evolution in humans

5 July 2018

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Mutation rate and specificity analysis of tetranucleotide microsatellite DNA alleles in somatic human cells

5 July 2018

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5 July 2018

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Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms

5 July 2018

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Microsatellite mutations in the germline: implications for evolutionary inference

5 July 2018

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DNA mismatch repair and genetic instability

5 July 2018

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5 July 2018

DNA replication fidelity

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Mutational analyses of dinucleotide and tetranucleotide microsatellites in Escherichia coli: influence of sequence on expansion mutagenesis

5 July 2018

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Somatic mutation rates and specificities at TC/AG and GT/CA microsatellite sequences in nontumorigenic human lymphoblastoid cells

5 July 2018

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DNA structure and polymerase fidelity

5 July 2018

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Modulation of epidermal growth factor receptor gene transcription by a polymorphic dinucleotide repeat in intron 1.

5 July 2018

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Distinct frequency-distributions of homopolymeric DNA tracts in different genomes

5 July 2018

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Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat

5 July 2018

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Consed: a graphical tool for sequence finishing

5 July 2018

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Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces

5 July 2018

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Polyvariant mutant cystic fibrosis transmembrane conductance regulator genes. The polymorphic (Tg)m locus explains the partial penetrance of the T5 polymorphism as a disease mutation

5 July 2018

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Microsatellite instability in yeast: dependence on the length of the microsatellite

5 July 2018

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Characteristic enrichment of DNA repeats in different genomes

5 July 2018

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Development and use of an in vitro HSV-tk forward mutation assay to study eukaryotic DNA polymerase processing of DNA alkyl lesions

5 July 2018

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The chemistry and biology of left-handed Z-DNA.

5 July 2018

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Cryptic simplicity in DNA is a major source of genetic variation.

5 July 2018

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5 July 2018

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Slipped-strand mispairing: a major mechanism for DNA sequence evolution

5 July 2018

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5 July 2018

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5 July 2018

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Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli

5 July 2018

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5 July 2018

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1 reference

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Base-pairing shift in the major groove of (CA)n tracts by B-DNA crystal structures

5 July 2018

1 reference

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Slippage synthesis of simple sequence DNA

5 July 2018

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Misalignment-mediated DNA synthesis errors

5 July 2018

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Comparative NMR study of An-bulge loops in DNA duplexes: intrahelical stacking of A, A-A, and A-A-A bulge loops

5 July 2018

1 reference

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IMEx: Imperfect Microsatellite Extractor.

5 July 2018

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Is there evidence for convergent evolution around human microsatellites?

28 October 2018

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Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans

28 October 2018

1 reference

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Allelic length of a CA dinucleotide repeat in the egfr gene correlates with the frequency of amplifications of this sequence--first results of an inter-ethnic breast cancer study.

28 October 2018

1 reference

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Positive correlation between DNA polymerase alpha-primase pausing and mutagenesis within polypyrimidine/polypurine microsatellite sequences

28 October 2018

1 reference

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The relationship between microsatellite slippage mutation rate and the number of repeat units

28 October 2018

1 reference

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Misalignment-mediated DNA polymerase beta mutations: comparison of microsatellite and frame-shift error rates using a forward mutation assay

28 October 2018

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Evolutionary history of microsatellites in the obscura group of Drosophila

28 October 2018

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Sequence analysis by additive scales: DNA structure for sequences and repeats of all lengths

28 October 2018

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Dinucleotide repeat expansion catalyzed by bacteriophage T4 DNA polymerase in vitro.

28 October 2018

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A threshold size for microsatellite expansion

28 October 2018

1 reference

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A tetranucleotide polymorphic microsatellite, located in the first intron of the tyrosine hydroxylase gene, acts as a transcription regulatory element in vitro

28 October 2018

1 reference

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Familial colorectal cancer in Ashkenazim due to a hypermutable tract in APC.

28 October 2018

1 reference

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Microsatellites show mutational bias and heterozygote instability

28 October 2018

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The birth of microsatellites

28 October 2018

1 reference

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Analysis of left-handed Z-DNA formation in short d(CG)n sequences in Escherichia coli and Halobacterium halobium plasmids. Stabilization by increasing repeat length and DNA supercoiling but not salinity

28 October 2018

1 reference

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The number of repeats expected in random nucleic acid sequences and found in genes

28 October 2018

1 reference

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The Relationship Between Microsatellite Polymorphism and Recombination Hot Spots in the Human Genome

28 October 2018

1 reference

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Human DNA polymerase beta recognizes single-stranded DNA using two different binding modes

28 October 2018

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12 December 2020

Exonucleolytic proofreading during replication of repetitive DNA

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12 December 2020

A DNA sequence evolution analysis generalized by simulation and the markov chain monte carlo method implicates strand slippage in a majority of insertions and deletions

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12 December 2020

Evolution of Microsatellites in the Yeast Saccharomyces cerevisiae: Role of Length and Number of Repeated Units

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12 December 2020

Insertions, substitutions, and the origin of microsatellites

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12 December 2020

Genetic basis of variable exon 9 skipping in cystic fibrosis transmembrane conductance regulator mRNA

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12 December 2020

Neighboring base effects on substitution rates in pseudogenes

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12 December 2020

Proton nuclear magnetic resonance studies on bulge-containing DNA oligonucleotides from a mutational hot-spot sequence

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12 December 2020

Hydrophobic interactions in the hinge domain of DNA polymerase beta are important but not sufficient for maintaining fidelity of DNA synthesis

1 reference

12 December 2020

The base substitution fidelity of eucaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation

1 reference

12 December 2020

Identifiers

DOI

10.1093/GBE/EVQ046

1 reference

31 July 2017

1 reference

31 July 2017

1 reference