PSORTdb--an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea (Q34149332)

31 July 2017

PSORTdb--an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea (English)

1 reference

31 July 2017

0 references

0 references

Nancy Y Yu

1

1 reference

31 July 2017

Matthew R Laird

series ordinal

2

1 reference

31 July 2017

Cory Spencer

series ordinal

3

1 reference

31 July 2017

Fiona S L Brinkman

series ordinal

4

1 reference

31 July 2017

language of work or name

English

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publication date

10 November 2010

1 reference

31 July 2017

Nucleic Acids Research

1 reference

31 July 2017

39

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31 July 2017

Database issue

1 reference

31 July 2017

D241-4

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

31 July 2017

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

MicroScope: a platform for microbial genome annotation and comparative genomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Opr86 is essential for viability and is a potential candidate for a protective antigen against biofilm formation by Pseudomonas aeruginosa

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Disclosure of the mycobacterial outer membrane: cryo-electron tomography and vitreous sections reveal the lipid bilayer structure.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

DBMLoc: a Database of proteins with multiple subcellular localizations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

WoLF PSORT: protein localization predictor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Augur--a computational pipeline for whole genome microbial surface protein prediction and classification.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Methods for predicting bacterial protein subcellular localization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

PSORTdb: a protein subcellular localization database for bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

DBSubLoc: database of protein subcellular localization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Role of a highly conserved bacterial protein in outer membrane protein assembly

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Differential expression and localization of Mn and Fe superoxide dismutases in the heterocystous cyanobacterium Anabaena sp. strain PCC 7120.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Extensive feature detection of N-terminal protein sorting signals

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Better prediction of protein cellular localization sites with the k nearest neighbors classifier.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Expert system for predicting protein localization sites in gram-negative bacteria

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

A knowledge base for predicting protein localization sites in eukaryotic cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013690

Genome update: the 1000th genome--a cautionary tale

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1093

Reproducible doxycycline-inducible transgene expression at specific loci generated by Cre-recombinase mediated cassette exchange

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1093

LocateP: genome-scale subcellular-location predictor for bacterial proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1093

CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1093

Cytoskeleton of mollicutes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1093

Sequence conserved for subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1093

Isolation and characterization of the plasma membrane and the outer membrane of Deinococcus radiodurans strain Sark

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21071402

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ1093

1 reference

31 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

31 July 2017

1 reference