GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers (Q34149898)

31 July 2017

GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers (English)

1 reference

31 July 2017

Sebastian Jünemann

1

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Alexander Goesmann

Alexander Goesmann

6

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Jörn Kalinowski

5

Jörn Kalinowski

1 reference

31 July 2017

7

Jens Stoye

1 reference

31 July 2017

Karola Prior

2

1 reference

31 July 2017

Andreas Albersmeier

3

1 reference

31 July 2017

Stefan Albaum

4

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31 July 2017

Dag Harmsen

8

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31 July 2017

language of work or name

English

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publication date

8 September 2014

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31 July 2017

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31 July 2017

9

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31 July 2017

9

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31 July 2017

e107014

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Creative Commons Attribution 4.0 International

31 July 2017

start time

8 September 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

MIRA

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

MUMmer

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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De novo likelihood-based measures for comparing genome assemblies

5 July 2018

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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

5 July 2018

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

5 July 2018

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Effects of GC bias in next-generation-sequencing data on de novo genome assembly

5 July 2018

1 reference

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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

5 July 2018

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5 July 2018

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Sequence assembly demystified

5 July 2018

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Performance comparison of benchtop high-throughput sequencing platforms

5 July 2018

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5 July 2018

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Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph

5 July 2018

1 reference

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Efficient de novo assembly of large genomes using compressed data structures

5 July 2018

1 reference

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GAGE: A critical evaluation of genome assemblies and assembly algorithms

5 July 2018

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How to apply de Bruijn graphs to genome assembly

5 July 2018

1 reference

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Assemblathon 1: a competitive assessment of de novo short read assembly methods

5 July 2018

1 reference

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Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the results

5 July 2018

1 reference

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Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology

5 July 2018

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Comparative studies of de novo assembly tools for next-generation sequencing technologies

5 July 2018

1 reference

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Comparing de novo genome assembly: the long and short of it

5 July 2018

1 reference

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A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies

5 July 2018

1 reference

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Error and error mitigation in low-coverage genome assemblies

5 July 2018

1 reference

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High-quality draft assemblies of mammalian genomes from massively parallel sequence data

5 July 2018

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De novo assembly of short sequence reads

5 July 2018

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Fast and accurate long-read alignment with Burrows-Wheeler transform

5 July 2018

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ABySS: a parallel assembler for short read sequence data

5 July 2018

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5 July 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

5 July 2018

1 reference

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Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4157817

Versatile and open software for comparing large genomes

5 July 2018

1 reference

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Amplification efficiency of thermostable DNA polymerases

5 July 2018

1 reference

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5 July 2018

The phusion assembler

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ARACHNE: a whole-genome shotgun assembler

5 July 2018

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Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology

5 July 2018

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Updating benchtop sequencing performance comparison

5 July 2018

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Aggressive assembly of pyrosequencing reads with mates

21 January 2018

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High-throughput gene mapping in Caenorhabditis elegans

21 January 2018

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“Celbenin” - resistant Staphylococci

21 January 2018

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Informed and automated k-mer size selection for genome assembly

21 January 2018

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Correcting errors in short reads by multiple alignments.

28 October 2018

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10.1371/JOURNAL.PONE.0107014

28 October 2018

Identifiers

DOI

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31 July 2017

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31 July 2017

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