QUAST: quality assessment tool for genome assemblies (Q39805869)

14 September 2017

QUAST: quality assessment tool for genome assemblies (English)

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14 September 2017

Alexey Gurevich

1

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author name string

Vladislav Saveliev

series ordinal

2

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14 September 2017

Nikolay Vyahhi

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3

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14 September 2017

Glenn Tesler

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4

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14 September 2017

language of work or name

English

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publication date

19 February 2013

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14 September 2017

4

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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14 September 2017

29

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14 September 2017

8

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14 September 2017

1072-1075

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Normalized N50 assembly metric using gap-restricted co-linear chaining

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

Plantagora: modeling whole genome sequencing and assembly of plant genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

GAGE: A critical evaluation of genome assemblies and assembly algorithms

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

Assemblathon 1: a competitive assessment of de novo short read assembly methods

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

Analysis of intra-genomic GC content homogeneity within prokaryotes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

De novo assembly of human genomes with massively parallel short read sequencing

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

Versatile and open software for comparing large genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

An Eulerian path approach to DNA fragment assembly

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

GeneMark.hmm: new solutions for gene finding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

The complete genome sequence of Escherichia coli K-12

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3624806

10.1093/BIOINFORMATICS/BTT086

20 August 2018

Identifiers

DOI

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journals/bioinformatics/GurevichSVT13

14 September 2017

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DBLP Dataset 2021-01-02

28 January 2021

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14 September 2017

PubMed publication ID

23422339

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