PASSEL: the PeptideAtlas SRMexperiment library (Q34154235)

31 July 2017

title

PASSEL: the PeptideAtlas SRMexperiment library (English)

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12

Ruedi Aebersold

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2

Eric W Deutsch

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7

Ulrike Kusebauch

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31 July 2017

Terry Farrah

1

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31 July 2017

Richard Kreisberg

3

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31 July 2017

Zhi Sun

4

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31 July 2017

David S Campbell

5

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Luis Mendoza

6

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Mi-Youn Brusniak

8

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Ruth Hüttenhain

9

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Ralph Schiess

10

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Nathalie Selevsek

11

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Robert L Moritz

13

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31 July 2017

language of work or name

English

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publication date

1 April 2012

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31 July 2017

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31 July 2017

volume

12

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issue

8

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page(s)

1170-1175

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TraML--a standard format for exchange of selected reaction monitoring transition lists

31 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

mProphet: automated data processing and statistical validation for large-scale SRM experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

mzML--a community standard for mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

Options and considerations when selecting a quantitative proteomics strategy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

A guided tour of the Trans-Proteomic Pipeline

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

Selected reaction monitoring for quantitative proteomics: a tutorial

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

MRMer, an interactive open source and cross-platform system for data extraction and visualization of multiple reaction monitoring experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

5 July 2018

The PeptideAtlas project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

PRIDE: the proteomics identifications database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

Open source system for analyzing, validating, and storing protein identification data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

A common open representation of mass spectrometry data and its application to proteomics research

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

Mass spectrometry-based proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3832291

Using the Human Plasma PeptideAtlas to study human plasma proteins

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPMIC.201100515

MRMaid-DB: a repository of published SRM transitions.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPMIC.201100515

21 January 2018

Identifiers

DOI

10.1002/PMIC.201100515

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31 July 2017

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31 July 2017

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