Novel insights through the integration of structural and functional genomics data with protein networks (Q34161379)

31 July 2017

title

Novel insights through the integration of structural and functional genomics data with protein networks (English)

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31 July 2017

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3

Mark B Gerstein

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31 July 2017

Declan Clarke

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31 July 2017

Nitin Bhardwaj

series ordinal

2

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31 July 2017

language of work or name

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11 February 2012

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Journal of Structural Biology

31 July 2017

published in

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31 July 2017

volume

179

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31 July 2017

issue

3

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31 July 2017

page(s)

320-326

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Integration of protein motions with molecular networks reveals different mechanisms for permanent and transient interactions

31 July 2017

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5 July 2018

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5 July 2018

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The powerful law of the power law and other myths in network biology

5 July 2018

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Sequencing technologies - the next generation

5 July 2018

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Towards inferring time dimensionality in protein-protein interaction networks by integrating structures: the p53 example

5 July 2018

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Integrated assessment of genomic correlates of protein evolutionary rate

5 July 2018

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5 July 2018

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5 July 2018

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Analyzing protein interaction networks using structural information

5 July 2018

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Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context

5 July 2018

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Relating three-dimensional structures to protein networks provides evolutionary insights

5 July 2018

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What is a support vector machine?

5 July 2018

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Intrinsic disorder and functional proteomics

5 July 2018

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The many faces of protein-protein interactions: A compendium of interface geometry

5 July 2018

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Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes

5 July 2018

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Evolutionary and physiological importance of hub proteins

5 July 2018

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Scale-free networks in cell biology

5 July 2018

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Flexible nets. The roles of intrinsic disorder in protein interaction networks.

5 July 2018

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Towards a proteome-scale map of the human protein–protein interaction network

5 July 2018

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A human protein-protein interaction network: a resource for annotating the proteome

5 July 2018

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Some protein interaction data do not exhibit power law statistics

5 July 2018

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Large-scale identification of yeast integral membrane protein interactions

5 July 2018

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PRISM: protein interactions by structural matching

5 July 2018

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Intrinsically unstructured proteins and their functions

5 July 2018

1 reference

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Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications

5 July 2018

1 reference

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Genomic analysis of regulatory network dynamics reveals large topological changes

5 July 2018

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Evidence for dynamically organized modularity in the yeast protein-protein interaction network

5 July 2018

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Evolutionary rate depends on number of protein-protein interactions independently of gene expression level

5 July 2018

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Genomic analysis of essentiality within protein networks

5 July 2018

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The DISOPRED server for the prediction of protein disorder

5 July 2018

1 reference

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The importance of intrinsic disorder for protein phosphorylation

5 July 2018

1 reference

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A map of the interactome network of the metazoan C. elegans

5 July 2018

1 reference

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A protein interaction map of Drosophila melanogaster

5 July 2018

1 reference

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Protein disorder prediction: implications for structural proteomics

5 July 2018

1 reference

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Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets

5 July 2018

1 reference

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Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome

5 July 2018

1 reference

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The third dimension for protein interactions and complexes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Intrinsic disorder in cell-signaling and cancer-associated proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Protein interactions: two methods for assessment of the reliability of high throughput observations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Intrinsic disorder and protein function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Specificity and stability in topology of protein networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Evolutionary rate in the protein interaction network

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Interrogating protein interaction networks through structural biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Prediction of protein-protein interactions by docking methods.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Functional organization of the yeast proteome by systematic analysis of protein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

What does it mean to be natively unfolded?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Intrinsically disordered protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Lethality and centrality in protein networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

A comprehensive two-hybrid analysis to explore the yeast protein interactome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Sequence complexity of disordered protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Comparative protein structure modeling of genes and genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Error and attack tolerance of complex networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

5 July 2018

The Protein Data Bank

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From molecular to modular cell biology

5 July 2018

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Emergence of Scaling in Random Networks

5 July 2018

1 reference

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Anatomy of hot spots in protein interfaces

5 July 2018

1 reference

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Exploring the potential of template-based modelling

5 July 2018

1 reference

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Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.

28 October 2018

1 reference

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Characterization and Prediction of Protein Interfaces to Infer Protein-Protein Interaction Networks

28 October 2018

1 reference

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The role of disorder in interaction networks: a structural analysis

28 October 2018

1 reference

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Prediction of multimolecular assemblies by multiple docking

28 October 2018

1 reference

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Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.

28 October 2018

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Structure-based assembly of protein complexes in yeast

28 October 2018

1 reference

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Predicting intrinsic disorder from amino acid sequence

28 October 2018

1 reference

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Flavors of protein disorder

28 October 2018

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The constraints protein-protein interactions place on sequence divergence

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830681

Evolutionary rate heterogeneity in proteins with long disordered regions

28 October 2018

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Protein disorder and the evolution of molecular recognition: theory, predictions and observations

28 October 2018

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Thousands of proteins likely to have long disordered regions.

28 October 2018

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Exploring the evolutionary rate differences of party hub and date hub proteins in Saccharomyces cerevisiae protein–protein interaction network

28 October 2018

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Effect of sampling on topology predictions of protein-protein interaction networks

28 October 2018

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Ten thousand interactions for the molecular biologist

28 October 2018

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100,000 protein structures for the biologist

28 October 2018

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Flexibility and conformational entropy in protein-protein binding

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How scale-free are biological networks

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12 December 2020

Sequence Data Analysis for Long Disordered Regions Prediction in the Calcineurin Family

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How the global structure of protein interaction networks evolves

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12 December 2020

The Relationship Between Sequence and Interaction Divergence in Proteins

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Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

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Improved modeling of side-chains in proteins with rotamer-based methods: A flexible rotamer model

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12 December 2020

The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes

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10.1016/J.JSB.2012.02.001

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DOI

1 reference

31 July 2017

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31 July 2017

1 reference