Hidden diversity in honey bee gut symbionts detected by single-cell genomics (Q34165718)

31 July 2017

Hidden diversity in honey bee gut symbionts detected by single-cell genomics (English)

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31 July 2017

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2

Ramunas Stepanauskas

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Nancy A. Moran

series ordinal

3

object named as

Nancy A Moran

1 reference

31 July 2017

Philipp Engel

1

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31 July 2017

11 September 2014

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31 July 2017

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31 July 2017

10

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31 July 2017

e1004596

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31 July 2017

9

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Creative Commons Attribution 4.0 International

31 July 2017

start time

11 September 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Variation in gut microbial communities and its association with pathogen infection in wild bumble bees (Bombus)

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Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

5 July 2018

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Insights into the phylogeny and coding potential of microbial dark matter

5 July 2018

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The long-term stability of the human gut microbiota

5 July 2018

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Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

5 July 2018

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Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

5 July 2018

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Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

5 July 2018

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The gut microbiota of insects - diversity in structure and function

5 July 2018

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Frischella perrara gen. nov., sp. nov., a gammaproteobacterium isolated from the gut of the honeybee, Apis mellifera

5 July 2018

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Comparative genomics of Wolbachia and the bacterial species concept

5 July 2018

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Multiple single-cell genomes provide insight into functions of uncultured Deltaproteobacteria in the human oral cavity

5 July 2018

1 reference

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Predominant archaea in marine sediments degrade detrital proteins.

5 July 2018

1 reference

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Previously unrecognized stages of species-specific colonization in the mutualism between Xenorhabdus bacteria and Steinernema nematodes

5 July 2018

1 reference

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The gut microbiota--masters of host development and physiology

5 July 2018

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BayesHammer: Bayesian clustering for error correction in single-cell sequencing

5 July 2018

1 reference

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Genomic variation landscape of the human gut microbiome

5 July 2018

1 reference

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Biodiversity and functional genomics in the human microbiome

5 July 2018

1 reference

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Single cell genomics: an individual look at microbes

5 July 2018

1 reference

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Pathogen webs in collapsing honey bee colonies

5 July 2018

1 reference

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Genomic sequencing of uncultured microorganisms from single cells

5 July 2018

1 reference

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jModelTest 2: more models, new heuristics and parallel computing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Gut microbiota composition correlates with diet and health in the elderly

5 July 2018

1 reference

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Functional diversity within the simple gut microbiota of the honey bee.

5 July 2018

1 reference

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A genome-wide study of recombination rate variation in Bartonella henselae.

5 July 2018

1 reference

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Distinctive gut microbiota of honey bees assessed using deep sampling from individual worker bees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

5 July 2018

1 reference

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Patterns of gene flow define species of thermophilic Archaea

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Establishment of characteristic gut bacteria during development of the honeybee worker

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Decontamination of MDA reagents for single cell whole genome amplification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

5 July 2018

1 reference

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Recombination and population structure in Salmonella enterica.

5 July 2018

1 reference

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High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Patterns of widespread decline in North American bumble bees

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Strain-resolved community genomic analysis of gut microbial colonization in a premature infant

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Evolutionary relationships of wild hominids recapitulated by gut microbial communities

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Comprehensive phylogeny of apid bees reveals the evolutionary origins and antiquity of cleptoparasitism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

DendroPy: a Python library for phylogenetic computing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Colony collapse disorder: a descriptive study

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

SOAP2: an improved ultrafast tool for short read alignment

5 July 2018

1 reference

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Assembling the marine metagenome, one cell at a time

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans

5 July 2018

1 reference

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The interplay of homologous recombination and horizontal gene transfer in bacterial speciation

5 July 2018

1 reference

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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

5 July 2018

1 reference

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A core gut microbiome in obese and lean twins

5 July 2018

1 reference

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Comparative analysis of human gut microbiota by barcoded pyrosequencing

5 July 2018

1 reference

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Evolution of mammals and their gut microbes

5 July 2018

1 reference

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IMG/M: a data management and analysis system for metagenomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Clustal W and Clustal X version 2.0

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

A metagenomic survey of microbes in honey bee colony collapse disorder

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

PAML 4: phylogenetic analysis by maximum likelihood

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Inference of bacterial microevolution using multilocus sequence data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

The bacterial species definition in the genomic era.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Ecological and evolutionary forces shaping microbial diversity in the human intestine

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Mechanisms of, and barriers to, horizontal gene transfer between bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Bacteriophages may bias outcome of bacterial enrichment cultures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Diversity of the human intestinal microbial flora

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Determination of the core of a minimal bacterial gene set

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Inferences from whole-genome sequences of bacterial pathogens

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Gene location and bacterial sequence divergence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Bacterial species and speciation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Bacterial ureases in infectious diseases.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Calibrating bacterial evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Shared themes of antigenic variation and virulence in bacterial, protozoal, and fungal infections.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161309

Bacterial communities in central European bumblebees: low diversity and high specificity

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Pyrosequencing analysis of the bacterial communities in the guts of honey bees Apis cerana and Apis mellifera in Korea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

A simple and distinctive microbiota associated with honey bees and bumble bees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Diversity and phylotype consistency of bacteria in the guts of three bee species (Apoidea) at an oilseed rape field.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Bacterial community structures in honeybee intestines and their response to two insecticidal proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Bacterial diversity in worker adults of Apis mellifera capensis and Apis mellifera scutellata (Insecta: Hymenoptera) assessed using 16S rRNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Cultivation and characterization of the gut symbionts of honey bees and bumble bees: description of Snodgrassella alvi gen. nov., sp. nov., a member of the family Neisseriaceae of the Betaproteobacteria, and Gilliamella apicola gen. nov., sp. nov....

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Disentangling associated genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Gut microbiota instead of host genotype drive the specificity in the interaction of a natural host-parasite system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Diversity and evolutionary patterns of bacterial gut associates of corbiculate bees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Population genomics of early events in the ecological differentiation of bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004596

Strategies of mixed substrate utilization in microorganisms

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25210772

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1004596

1 reference

31 July 2017

1 reference

31 July 2017

1 reference

PubMed ID

25210772