Population genomics of early events in the ecological differentiation of bacteria. (Q42136525)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491847%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

title

Population genomics of early events in the ecological differentiation of bacteria (English)

1 reference

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28 January 2020

0 references

1

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28 January 2020

Martin F. Polz

7

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28 January 2020

3

Otto X Cordero

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28 January 2020

8

Eric J Alm

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28 January 2020

author name string

Jonathan Friedman

2

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28 January 2020

Sarah P Preheim

4

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28 January 2020

Sonia C Timberlake

5

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28 January 2020

Gitta Szabó

6

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28 January 2020

language of work or name

English

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publication date

1 April 2012

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28 January 2020

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28 January 2020

volume

336

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28 January 2020

issue

6077

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28 January 2020

page(s)

48-51

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maintained by WikiProject

28 January 2020

1 reference

Detection of recombination events in bacterial genomes from large population samples

1 reference

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29 May 2018

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1 reference

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29 May 2018

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29 May 2018

1 reference

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29 May 2018

1 reference

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AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.

29 May 2018

1 reference

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Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities.

29 May 2018

1 reference

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29 May 2018

1 reference

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Genome evolution and adaptation in a long-term experiment with Escherichia coli

29 May 2018

1 reference

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An intricate network of regulators controls biofilm formation and colonization by Vibrio fischeri.

29 May 2018

1 reference

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Looking for Darwin's footprints in the microbial world

29 May 2018

1 reference

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29 May 2018

1 reference

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Inactivation of mismatch repair increases the diversity of Vibrio parahaemolyticus.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

29 May 2018

1 reference

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Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics

29 May 2018

1 reference

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Searching for species in haloarchaea

29 May 2018

1 reference

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Genetic exchange across a species boundary in the archaeal genus ferroplasma

29 May 2018

1 reference

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A systematics for discovering the fundamental units of bacterial diversity

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Recombination and the nature of bacterial speciation

29 May 2018

1 reference

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Toothpicks, serendipity and the emergence of the Escherichia coli DnaK (Hsp70) and GroEL (Hsp60) chaperone machines

29 May 2018

1 reference

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Inference of bacterial microevolution using multilocus sequence data

29 May 2018

1 reference

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Mismatch induced speciation in Salmonella: model and data

29 May 2018

1 reference

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

29 May 2018

1 reference

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Positive natural selection in the human lineage

29 May 2018

1 reference

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Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli

29 May 2018

1 reference

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The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

29 May 2018

1 reference

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Genomic islands of speciation in Anopheles gambiae

29 May 2018

1 reference

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Hybrid Vibrio vulnificus.

29 May 2018

1 reference

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A regulatory trade-off as a source of strain variation in the species Escherichia coli

29 May 2018

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

29 May 2018

1 reference

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The Vibrio cholerae chitin utilization program

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Neighbor-net: an agglomerative method for the construction of phylogenetic networks

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Promoter use by sigma 38 (rpoS) RNA polymerase. Amino acid clusters for DNA binding and isomerization

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Gene transfer in bacteria: speciation without species?

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

The fate of microbial mutators

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Estimation of linkage disequilibrium for loci with multiple alleles: basic approach and an application using data from bighorn sheep

29 May 2018

1 reference

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A coalescent-based method for detecting and estimating recombination from gene sequences

29 May 2018

1 reference

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The mannose-sensitive hemagglutinin of Vibrio cholerae promotes adherence to zooplankton

29 May 2018

1 reference

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Sexual isolation in bacteria

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Identification of a vibrio cholerae RTX toxin gene cluster that is tightly linked to the cholera toxin prophage

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Detecting selective sweeps in naturally occurring Escherichia coli

29 May 2018

1 reference

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Construction of a general human chromosome jumping library, with application to cystic fibrosis

29 May 2018

1 reference

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Recombination in Escherichia coli and the definition of biological species

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Adaptive protein evolution at the Adh locus in Drosophila

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

De novo fragment assembly with short mate-paired reads: Does the read length matter?

29 May 2018

1 reference

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Resource partitioning and sympatric differentiation among closely related bacterioplankton.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Dual multiple change-point model leads to more accurate recombination detection.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

Repair of DNA methylphosphotriesters through a metalloactivated cysteine nucleophile.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3337212

17 August 2018

Identifiers

DOI

10.1126/SCIENCE.1218198

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491847%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491847%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22491847%20AND%20SRC:MED&resulttype=core&format=json