De novo design of foldable proteins with smooth folding funnel: automated negative design and experimental verification (Q34195669)

31 July 2017

De novo design of foldable proteins with smooth folding funnel: automated negative design and experimental verification (English)

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31 July 2017

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Wenzhen Jin

1

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31 July 2017

Ohki Kambara

2

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31 July 2017

Hiroaki Sasakawa

3

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31 July 2017

Atsuo Tamura

4

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31 July 2017

Shoji Takada

5

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31 July 2017

1 May 2003

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31 July 2017

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31 July 2017

11

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31 July 2017

5

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31 July 2017

581-590

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De novo design of helical bundles as models for understanding protein folding and function.

31 July 2017

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Sequence space, folding and protein design

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Computational protein design

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

A polar, solvent-exposed residue can be essential for native protein structure

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Combinatorial protein design

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Energy estimation in protein design

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Characterization of a helical protein designed from first principles

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Solution structure and dynamics of a de novo designed three-helix bundle protein

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

De novo protein design: fully automated sequence selection

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Designing protein beta-sheet surfaces by Z-score optimization.

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Design of a 20-amino acid, three-stranded beta-sheet protein

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

High-resolution protein design with backbone freedom

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Functional rapidly folding proteins from simplified amino acid sequences.

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Alternative packing arrangements in the hydrophobic core of λrepresser

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Protein folding simulation with solvent-induced force field: folding pathway ensemble of three-helix-bundle proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Rational protein design: combining theory and experiment

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Theory of protein folding: the energy landscape perspective

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Protein design: a perspective from simple tractable models.

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Statistical theory for protein combinatorial libraries. Packing interactions, backbone flexibility, and the sequence variability of a main-chain structure.

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Designing protein energy landscapes

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

The GA module, a mobile albumin-binding bacterial domain, adopts a three-helix-bundle structure

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Solution structure of the albumin-binding GA module: a versatile bacterial protein domain

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Optimal protein-folding codes from spin-glass theory

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Prediction of protein secondary structure at better than 70% accuracy

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

An all atom force field for simulations of proteins and nucleic acids

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

WHAT IF: a molecular modeling and drug design program

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

The helix-coil transition in heterogeneous peptides with specific side-chain interactions: Theory and comparison with CD spectral data

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Characterisation of protein unfolding by NMR diffusion measurements

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Role of the molten globule state in protein folding.

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Contact order, transition state placement and the refolding rates of single domain proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Roles of native topology and chain-length scaling in protein folding: a simulation study with a Go-like model.

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

A surprising simplicity to protein folding.

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Calculation of protein extinction coefficients from amino acid sequence data

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

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https://api.crossref.org/works/10.1016%2FS0969-2126%2803%2900075-3

7 January 2021

10.1016/S0969-2126(03)00075-3

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31 July 2017

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