CONTRA: copy number analysis for targeted resequencing (Q34219588)

31 July 2017

title

CONTRA: copy number analysis for targeted resequencing (English)

1 reference

31 July 2017

Richard W Tothill

7

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Kylie Gorringe

Kylie L Gorringe

10

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Jason Li

Jason Li

1

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Saman Halgamuge

Saman K Halgamuge

8

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Ian G. Campbell

Ian G Campbell

9

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Kaushalya C Amarasinghe

Kaushalya C Amarasinghe

3

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Georgina L Ryland

6

Georgina L Ryland

1 reference

31 July 2017

2

Richard Lupat

1 reference

31 July 2017

4

Ella R Thompson

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31 July 2017

Maria A Doyle

5

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31 July 2017

language of work or name

English

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publication date

2 April 2012

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31 July 2017

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31 July 2017

volume

28

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31 July 2017

issue

10

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31 July 2017

page(s)

1307-1313

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Creative Commons Attribution-NonCommercial 3.0 Unported

31 July 2017

copyright license

start time

2 October 2016

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April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

Accurate and exact CNV identification from targeted high-throughput sequence data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

CNAseg--a novel framework for identification of copy number changes in cancer from second-generation sequencing data.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

Detecting copy number variation with mated short reads

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

Detection of inherited mutations for breast and ovarian cancer using genomic capture and massively parallel sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

Massively parallel sequencing of exons on the X chromosome identifies RBM10 as the gene that causes a syndromic form of cleft palate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

BEDTools: a flexible suite of utilities for comparing genomic features

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

Computational methods for discovering structural variation with next-generation sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

Targeted capture and massively parallel sequencing of 12 human exomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

Fast and accurate short read alignment with Burrows-Wheeler transform

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

High-resolution mapping of copy-number alterations with massively parallel sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3348560

10.1093/BIOINFORMATICS/BTS146

5 July 2018

Identifiers

DOI

1 reference

journals/bioinformatics/LiLATDRTHCG12

31 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

31 July 2017

1 reference