Comparative omics-driven genome annotation refinement: application across Yersiniae (Q34221757)

31 July 2017

Comparative omics-driven genome annotation refinement: application across Yersiniae (English)

1 reference

31 July 2017

1 reference

Samuel H Payne

8

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Samuel Owen Purvine

Samuel O Purvine

4

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Joshua N Adkins

Joshua N Adkins

14

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Richard D. Smith

Richard D Smith

11

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Matthew E Monroe

6

Matthew E Monroe

1 reference

31 July 2017

7

Heather M Brewer

1 reference

31 July 2017

13

Vladimir L Motin

1 reference

Alexandra C Schrimpe-Rutledge

31 July 2017

1

Alexandra C Schrimpe-Rutledge

1 reference

31 July 2017

9

Charles Ansong

1 reference

31 July 2017

Scott Dryden-Peterson

12

Scott N Peterson

1 reference

31 July 2017

Marcus B Jones

2

1 reference

31 July 2017

Sadhana Chauhan

3

1 reference

31 July 2017

James A Sanford

5

1 reference

31 July 2017

Bryan C Frank

10

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31 July 2017

language of work or name

English

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publication date

27 March 2012

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31 July 2017

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31 July 2017

7

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31 July 2017

3

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31 July 2017

e33903

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Creative Commons Attribution 4.0 International

31 July 2017

start time

27 March 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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False discovery rates of protein identifications: a strike against the two-peptide rule

5 July 2018

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Evaluation of three automated genome annotations for Halorhabdus utahensis

5 July 2018

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A perfect genome annotation is within reach with the proteomics and genomics alliance.

5 July 2018

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Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation

5 July 2018

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Optimization of proteomic sample preparation procedures for comprehensive protein characterization of pathogenic systems.

5 July 2018

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5 July 2018

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Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

5 July 2018

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High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example

5 July 2018

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Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes

5 July 2018

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Comparative bacterial proteomics: analysis of the core genome concept

5 July 2018

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5 July 2018

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Pestoides F, an atypical Yersinia pestis strain from the former Soviet Union.

5 July 2018

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Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

5 July 2018

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5 July 2018

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On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer

5 July 2018

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Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions

5 July 2018

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A distal enhancer and an ultraconserved exon are derived from a novel retroposon

5 July 2018

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Influence of Na(+), dicarboxylic amino acids, and pH in modulating the low-calcium response of Yersinia pestis

5 July 2018

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5 July 2018

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Pseudogene accumulation might promote the adaptive microevolution of Yersinia pestis

5 July 2018

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Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations

5 July 2018

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The 1.2-megabase genome sequence of Mimivirus

5 July 2018

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Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313959

Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus

5 July 2018

1 reference

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Comparative genomics, minimal gene-sets and the last universal common ancestor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313959

Lack of O-antigen is essential for plasminogen activation by Yersinia pestis and Salmonella enterica

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313959

Pseudogenes: Are They “Junk” or Functional DNA?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313959

Genetic variability of Yersinia pestis isolates as predicted by PCR-based IS100 genotyping and analysis of structural genes encoding glycerol-3-phosphate dehydrogenase (glpD)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313959

Genome sequence of Yersinia pestis, the causative agent of plague

5 July 2018

1 reference

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Genome annotation: from sequence to biology

5 July 2018

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Initial sequencing and analysis of the human genome

5 July 2018

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The Sequence of the Human Genome

5 July 2018

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Artemis: sequence visualization and annotation

5 July 2018

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Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis

5 July 2018

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The complete genome sequence of Escherichia coli K-12

5 July 2018

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Programmed translational frameshifting.

5 July 2018

1 reference

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Invasin production by Yersinia pestis is abolished by insertion of an IS200-like element within the inv gene.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313959

Physiological basis of the low calcium response in Yersinia pestis.

5 July 2018

1 reference

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Yersinia infections: centennial of the discovery of the plague bacillus

5 July 2018

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5 July 2018

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Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

5 July 2018

1 reference

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Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome

21 January 2018

1 reference

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A predictive model for identifying proteins by a single peptide match.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0033903

Functional characterization and high-throughput proteomic analysis of interrupted genes in the archaeon Sulfolobus solfataricus

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0033903

Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0033903

Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0033903

Peptide-to-protein distribution versus a competition for significance to estimate error rate in blood protein identification

21 January 2018

1 reference

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Two are not always better than one

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22479471

12 December 2020

inferred from PubMed ID database lookup

The pros and cons of peptide-centric proteomics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22479471

12 December 2020

inferred from PubMed ID database lookup

Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22479471

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0033903

1 reference

release_tzbwfrwxe5gcfkq3egrn3clhee

31 July 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/tzbwfrwxe5gcfkq3egrn3clhee

24 November 2022

mapped directly with Wikidata item

PMCID

3313959

1 reference

31 July 2017

1 reference