MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects (Q34109062)

31 July 2017

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects (English)

1 reference

31 July 2017

0 references

Carson Holt

1

1 reference

PubMed ID

22192575

31 July 2017

Mark Yandell

series ordinal

2

1 reference

31 July 2017

22 December 2011

1 reference

31 July 2017

1 reference

31 July 2017

12

1 reference

31 July 2017

491

1 reference

Creative Commons Attribution 2.0 Generic

31 July 2017

start time

1 December 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-12-491

0 references

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The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Comparative genomics suggests that the fungal pathogen pneumocystis is an obligate parasite scavenging amino acids from its host's lungs

5 July 2018

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5 July 2018

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5 July 2018

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Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator

5 July 2018

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Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

5 July 2018

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The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

5 July 2018

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AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.

5 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

5 July 2018

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Genomic hotspots for adaptation: the population genetics of Müllerian mimicry in the Heliconius melpomene clade

5 July 2018

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Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

5 July 2018

1 reference

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Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs

5 July 2018

1 reference

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Detailed analysis of a contiguous 22-Mb region of the maize genome

5 July 2018

1 reference

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The genome of the blood fluke Schistosoma mansoni

5 July 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

5 July 2018

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Quantitative measures for the management and comparison of annotated genomes

5 July 2018

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5 July 2018

1 reference

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Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics

5 July 2018

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MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

SmedGD: the Schmidtea mediterranea genome database

5 July 2018

1 reference

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A Chado case study: an ontology-based modular schema for representing genome-associated biological information

5 July 2018

1 reference

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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

5 July 2018

1 reference

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5 July 2018

1 reference

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Insights into social insects from the genome of the honeybee Apis mellifera

5 July 2018

1 reference

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5 July 2018

1 reference

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5 July 2018

1 reference

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Gene identification in novel eukaryotic genomes by self-training algorithm

5 July 2018

1 reference

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Galaxy: a platform for interactive large-scale genome analysis

5 July 2018

1 reference

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Repbase Update, a database of eukaryotic repetitive elements

5 July 2018

1 reference

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InterProScan: protein domains identifier

5 July 2018

1 reference

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The Sequence Ontology: a tool for the unification of genome annotations

5 July 2018

1 reference

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Gene finding in novel genomes

5 July 2018

1 reference

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The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Eval: a software package for analysis of genome annotations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Gene prediction with a hidden Markov model and a new intron submodel

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Initial sequencing and comparative analysis of the mouse genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

The generic genome browser: a building block for a model organism system database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Initial sequencing and analysis of the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

The Sequence of the Human Genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

The genome sequence of Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Genome sequence of the nematode C. elegans: a platform for investigating biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Genetic and physical maps of Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

dbEST--database for "expressed sequence tags"

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

Evaluation of gene structure prediction programs.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280279

28 October 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/22192575

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-12-491

1 reference

31 July 2017

journals/bmcbi/HoltY11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

31 July 2017

1 reference

PubMed ID

22192575