Next-generation sequencing technologies for environmental DNA research (Q34225587)

31 July 2017

Next-generation sequencing technologies for environmental DNA research (English)

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31 July 2017

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3

Joel F Gibson

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31 July 2017

4

Mehrdad Hajibabaei

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31 July 2017

1

Shadi Shokralla

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31 July 2017

Jennifer L Spall

2

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31 July 2017

1 April 2012

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31 July 2017

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31 July 2017

21

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31 July 2017

1794-1805

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31 July 2017

8

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Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

31 July 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Comparative analysis of human gut microbiota by barcoded pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Assessment of bacterial diversity in the cattle tick Rhipicephalus (Boophilus) microplus through tag-encoded pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

The marine viromes of four oceanic regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Human papillomavirus genotyping by 454 next generation sequencing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Barcoded primers used in multiplex amplicon pyrosequencing bias amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Discriminating plant species in a local temperate flora using the rbcL+matK DNA barcode

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Preparation of next-generation sequencing libraries using Nextera™ technology: simultaneous DNA fragmentation and adaptor tagging by in vitro transposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

A DNA barcode for land plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

A metagenomic survey of microbes in honey bee colony collapse disorder

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Using pyrosequencing to shed light on deep mine microbial ecology

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Real-time DNA sequencing from single polymerase molecules

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Species detection using environmental DNA from water samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Direct detection of DNA methylation during single-molecule, real-time sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Microbial community gene expression in ocean surface waters

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Field guide to next-generation DNA sequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Ancient DNA reveals late survival of mammoth and horse in interior Alaska

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Single-molecule DNA sequencing of a viral genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Comparison of normalization methods for construction of large, multiplex amplicon pools for next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Target enrichment via DNA hybridization capture

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Microbial population structures in the deep marine biosphere

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Targeted polymerase chain reaction-based enrichment and next generation sequencing for diagnostic testing of congenital disorders of glycosylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Vertical distribution of fungal communities in tallgrass prairie soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Influence of management practices on large herbivore diet—Case of European bison in Białowieża Primeval Forest (Poland)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Reevaluation and reduction of a PCR bias caused by reannealing of templates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Archaea predominate among ammonia-oxidizing prokaryotes in soils

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Target-enrichment strategies for next-generation sequencing

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Next-generation DNA sequencing methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

The impact of next-generation sequencing technology on genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Sequencing technologies - the next generation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

A universal DNA mini-barcode for biodiversity analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Bacterial carbon processing by generalist species in the coastal ocean.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Universal DNA-Based Methods for Assessing the Diet of Grazing Livestock and Wildlife from Feces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Ecometagenetics confirm high tropical rainforest nematode diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Single-molecule sequencing of an individual human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Single-molecule DNA sequencing technologies for future genomics research

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Accurate determination of microbial diversity from 454 pyrosequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

An integrated semiconductor device enabling non-optical genome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Soil bacterial and fungal communities across a pH gradient in an arable soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

DNA sequencing with chain-terminating inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Next-generation sequencing transforms today's biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Microbial diversity in the deep sea and the underexplored "rare biosphere"

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Tag-encoded FLX amplicon pyrosequencing for the elucidation of microbial and functional gene diversity in any environment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Enrichment of sequencing targets from the human genome by solution hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Metagenomic analysis of the microbial community associated with the coral Porites astreoides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Bar-coded pyrosequencing reveals the responses of PBDE-degrading microbial communities to electron donor amendments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Human gut microbiota in obesity and after gastric bypass

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

The impact of next-generation sequencing on genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

Assessment of soil fungal communities using pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05538.X

10.1111/J.1365-294X.2012.05538.X

21 January 2018

Identifiers

DOI

1 reference

31 July 2017

1 reference

PubMed ID

22486820